Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS00010 and BWI76_RS00015 are separated by 138 nucleotidesBWI76_RS00015 and BWI76_RS00020 are separated by 4 nucleotidesBWI76_RS00020 and BWI76_RS00025 are separated by 321 nucleotidesBWI76_RS00025 and BWI76_RS00030 are separated by 111 nucleotides BWI76_RS00010: BWI76_RS00010 - DNA replication and repair protein RecF, at 2,444 to 3,517 _RS00010 BWI76_RS00015: BWI76_RS00015 - DNA polymerase III subunit beta, at 3,656 to 4,756 _RS00015 BWI76_RS00020: BWI76_RS00020 - chromosomal replication initiation protein DnaA, at 4,761 to 6,161 _RS00020 BWI76_RS00025: BWI76_RS00025 - hypothetical protein, at 6,483 to 6,673 _RS00025 BWI76_RS00030: BWI76_RS00030 - 50S ribosomal protein L34, at 6,785 to 6,925 _RS00030
Group Condition BWI76_RS00010 BWI76_RS00015 BWI76_RS00020 BWI76_RS00025 BWI76_RS00030
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. N.D. -4.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. N.D. -4.6 N.D.
nitrogen source D-Serine (N) -0.3 N.D. N.D. -3.9 N.D.
nitrogen source nitrate (N) +0.1 N.D. N.D. -4.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. -3.2 N.D.
stress Sisomicin 0.008 mg/ml -0.4 N.D. N.D. -3.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 N.D. N.D. -2.6 N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -0.2 N.D. N.D. -3.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 N.D. N.D. -3.3 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.8 N.D. N.D. -2.4 N.D.
carbon source pyruvate (C) -0.5 N.D. N.D. -2.7 N.D.
stress Paraquat dichloride 0.1 mg/ml -0.5 N.D. N.D. -2.7 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -0.7 N.D. N.D. -2.3 N.D.
nitrogen source Adenosine (N) -0.3 N.D. N.D. -2.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 N.D. N.D. -1.7 N.D.
phage K. M5a1 KLEB10 MOI 1 -0.1 N.D. N.D. -2.7 N.D.
phage KLEB20 MOI 0.1 -1.0 N.D. N.D. -1.8 N.D.
nitrogen source L-Serine (N) -0.3 N.D. N.D. -2.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 N.D. N.D. -1.8 N.D.
carbon source a-Cyclodextrin (C) -0.2 N.D. N.D. -2.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -0.1 N.D. N.D. -2.4 N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.4 N.D. N.D. +2.2 N.D.
phage KLEB15 MOI 0.1 -0.3 N.D. N.D. +2.3 N.D.
phage KLEB15 MOI 0.1 -0.8 N.D. N.D. +2.7 N.D.
phage KLEB24 MOI 1 +0.1 N.D. N.D. +2.5 N.D.
phage KLEB29 MOI 0.1 -0.1 N.D. N.D. +2.7 N.D.
stress Chloramphenicol 0.001 mg/ml -0.2 N.D. N.D. +2.8 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.6 N.D. N.D. +3.4 N.D.
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x +0.6 N.D. N.D. +2.2 N.D.
phage KLEB29 MOI 1 -0.0 N.D. N.D. +2.9 N.D.
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