Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS36450 and BPHYT_RS36455 are separated by 0 nucleotidesBPHYT_RS36455 and BPHYT_RS36460 are separated by 12 nucleotidesBPHYT_RS36460 and BPHYT_RS36465 are separated by 58 nucleotidesBPHYT_RS36465 and BPHYT_RS36470 are separated by 252 nucleotides BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559 _RS36450 BPHYT_RS36455: BPHYT_RS36455 - hypothetical protein, at 102,560 to 102,778 _RS36455 BPHYT_RS36460: BPHYT_RS36460 - hypothetical protein, at 102,791 to 103,294 _RS36460 BPHYT_RS36465: BPHYT_RS36465 - DNA-binding protein, at 103,353 to 103,673 _RS36465 BPHYT_RS36470: BPHYT_RS36470 - hypothetical protein, at 103,926 to 104,846 _RS36470
Group Condition BPHYT_RS36450 BPHYT_RS36455 BPHYT_RS36460 BPHYT_RS36465 BPHYT_RS36470
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 N.D. -0.4 N.D. -2.9
phage 24hr PHYTO9 MOI 10 -0.4 N.D. -1.4 N.D. -2.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. -0.5 N.D. -3.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.3 N.D. -1.6 N.D. -0.4
phage 36hr PHYTO2 MOI 1 -0.3 N.D. -1.7 N.D. -1.0
phage P. phyto PHYTO2 MOI 1 +0.2 N.D. +0.4 N.D. -3.3
carbon source Suberic (C) -0.1 N.D. -0.7 N.D. -1.9
carbon source Suberic (C) -0.2 N.D. -1.2 N.D. -1.1
phage 24hr PHYTO2 MOI 0.1 -0.3 N.D. -1.6 N.D. -0.6
carbon source Phenylacetic 5 mM (C) -0.8 N.D. -1.1 N.D. -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 N.D. -0.2 N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. -1.7 N.D. -0.6
phage 36hr PHYTO3 MOI 1 +0.3 N.D. +0.5 N.D. -2.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. -0.8 N.D. -1.5
supernatant control Vogels_fungal_media 0.1X +0.2 N.D. -1.5 N.D. -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 N.D. -1.6 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 N.D. +0.7 N.D. -2.3
supernatant control Vogels_fungal_media 0.1X -0.6 N.D. +0.6 N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 N.D. +0.7 N.D. -1.7
nophagecontrol 24hr Phyto Lib only +0.0 N.D. +0.8 N.D. -1.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 N.D. -0.4 N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.1 N.D. -1.3 N.D. +0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.7 N.D. +0.5 N.D. -1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +1.0 N.D. -1.5 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 N.D. -0.9 N.D. +1.4
nitrogen source L-Lysine (N) -0.4 N.D. +1.2 N.D. +0.8
phage 24hr PHYTO3 MOI 10 +0.7 N.D. -0.1 N.D. +1.7
phage 36hr PHYTO10 MOI 10 +0.7 N.D. +0.8 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 N.D. +0.1 N.D. +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. +1.2 N.D. +1.2
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