Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS36335	BPHYT_RS36340	BPHYT_RS36345	BPHYT_RS36350	BPHYT_RS36355
vitamin	With vitamins t1	-0.5	-0.8	+0.2	-0.6	-1.4
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	-1.1	-0.4	+0.0	-1.3
phage	P. phyto PHYTO2 MOI 0.1	-0.3	-0.3	+0.2	-0.0	-2.6
no phage control	No phage control	+0.0	-0.6	-0.3	+0.2	-1.9
nophagecontrol	36hr Phyto Lib only	+0.1	-0.3	-0.2	-0.3	-1.7
phage	24hr PHYTO7 MOI 1	-0.0	-0.5	-0.0	+0.2	-1.9
vitamin	No vitamins t2	-0.4	-0.6	+0.2	-0.9	-0.5
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.2	-0.8	+0.0	-0.3	-1.1
phage	P. phyto corn MOI 1	+0.1	-0.0	-0.0	+0.1	-2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-1.3	-0.1	+0.0	-0.6
phage	24hr PHYTO11 MOI 1	-0.3	-0.5	+0.0	+0.2	-1.3
phage	24hr PHYTO4 MOI 10	+0.5	+0.4	-0.6	-0.6	-1.7
nophagecontrol	36hr Phyto Lib Only	-0.1	+0.1	-0.3	+0.2	-1.5
phage	36hr PHYTO11 MOI 1	+0.0	+0.3	-0.2	+0.1	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.4	+0.0	+0.6	-1.4
phage	36hr PHYTO10 MOI 10	-0.3	+0.2	-0.6	+0.4	-1.0
phage	36hr PHYTO8 MOI 10	+0.2	+0.4	-0.4	-0.0	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-0.8	-0.6	-0.3	+0.7
phage	36hr PHYTO1 MOI 10	-0.2	+0.4	-0.1	+0.4	-1.4
motility	inner cut, LB soft agar motility assay	-0.2	+0.6	+0.0	-0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-1.2	-0.2	+0.6	-0.8
phage	36hr PHYTO6 MOI 10	+0.2	+0.3	+0.1	+0.1	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	+0.7	-0.0	+0.3	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.9	+0.0	-0.8	+1.3
motility	outer cut, LB soft agar motility assay	+0.2	-0.5	+0.3	+0.5	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.5	+0.0	-0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.8	+0.2	-0.6	+0.4
carbon source	L-Fucose (C)	+0.2	+0.9	+0.2	+0.4	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	+0.8	+0.1	+0.4	-0.6
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.2	+2.8	+0.1	+0.2	+0.7