Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS36205	BPHYT_RS36210	BPHYT_RS36215	BPHYT_RS36220	BPHYT_RS36225
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	-0.7	-4.5	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.0	-4.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	N.D.	N.D.	+0.1	-4.0	-0.1
phage	36hr PHYTO6 MOI 1	N.D.	N.D.	+0.2	-3.9	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	N.D.	-0.1	-3.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	-1.0	-2.3	-0.1
carbon source	2-Deoxy-D-Ribose (C)	N.D.	N.D.	-0.9	-2.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.9	-2.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-1.6	-1.2	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	+0.7	-3.3	-0.2
carbon source	Gly-Glu (C)	N.D.	N.D.	-0.3	-1.8	-0.5
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	-0.4	-2.2	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.5	-2.0	-0.1
phage	24hr PHYTO4 MOI 10	N.D.	N.D.	+0.3	-2.2	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	-0.1	-2.9	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	+0.3	-2.6	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	-0.3	-2.1	-0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-1.9	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	-1.7	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-1.5	+0.9	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.7	-1.6	+0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-0.9	+1.4	-0.5
phage	24hr PHYTO6 MOI 10	N.D.	N.D.	+1.0	+0.3	-1.0
phage	36hr PHYTO10 MOI 10	N.D.	N.D.	-0.2	+1.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-1.0	+1.4	+0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-0.3	+2.0	-0.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	N.D.	+0.1	+2.3	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	-0.9	+2.8	-0.3
nitrogen source	L-Lysine (N)	N.D.	N.D.	+0.7	+1.8	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.2	+4.0	-1.0