Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS36050 and BPHYT_RS36055 are separated by 8 nucleotidesBPHYT_RS36055 and BPHYT_RS36060 are separated by 9 nucleotidesBPHYT_RS36060 and BPHYT_RS36065 are separated by 7 nucleotidesBPHYT_RS36065 and BPHYT_RS36070 overlap by 1 nucleotides BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393 _RS36050 BPHYT_RS36055: BPHYT_RS36055 - hypothetical protein, at 37,402 to 37,695 _RS36055 BPHYT_RS36060: BPHYT_RS36060 - hypothetical protein, at 37,705 to 38,094 _RS36060 BPHYT_RS36065: BPHYT_RS36065 - hypothetical protein, at 38,102 to 38,296 _RS36065 BPHYT_RS36070: BPHYT_RS36070 - hypothetical protein, at 38,296 to 38,571 _RS36070
Group Condition BPHYT_RS36050 BPHYT_RS36055 BPHYT_RS36060 BPHYT_RS36065 BPHYT_RS36070
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -0.2 -2.0 -2.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -1.9 -1.4 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -2.3 -0.4 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +1.5 -3.9 -0.3 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.8 -1.5 -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -1.4 -0.7 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -1.9 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.2 -0.6 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.5 -0.8 -0.7 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.4 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 -1.4 -0.8 N.D. N.D.
phage 36hr PHYTO10 MOI 10 +0.0 -1.8 -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 -0.5 -1.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 -1.7 -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.2 -0.8 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 -1.7 -0.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days +0.3 -0.6 -1.1 N.D. N.D.
phage P. phyto PHYTO2 MOI 0.1 +0.5 -1.0 -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.5 -1.0 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 -1.6 +0.3 N.D. N.D.
no phage control No phage control +0.6 -1.3 -0.1 N.D. N.D.
phage 36hr PHYTO11 MOI 1 +0.7 -0.6 -0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -1.2 +0.6 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 -1.7 +1.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.0 +0.1 +0.8 N.D. N.D.
phage 24hr PHYTO9 MOI 10 +0.5 -0.8 +0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -0.8 +1.8 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.9 +1.9 N.D. N.D.
motility outer cut, LB soft agar motility assay +0.3 +0.5 +1.1 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +1.2 +0.7 +0.1 N.D. N.D.
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