Fitness for 5 genes in Burkholderia phytofirmans PsJN

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Top 30 experiments (either direction), sorted by average fitness

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500 ntBPHYT_RS36030 and BPHYT_RS36035 are separated by 44 nucleotidesBPHYT_RS36035 and BPHYT_RS36040 are separated by 24 nucleotidesBPHYT_RS36040 and BPHYT_RS36045 overlap by 4 nucleotidesBPHYT_RS36045 and BPHYT_RS36050 are separated by 20 nucleotides BPHYT_RS36030: BPHYT_RS36030 - hypothetical protein, at 35,141 to 35,560 _RS36030 BPHYT_RS36035: BPHYT_RS36035 - hypothetical protein, at 35,605 to 36,003 _RS36035 BPHYT_RS36040: BPHYT_RS36040 - hypothetical protein, at 36,028 to 36,657 _RS36040 BPHYT_RS36045: BPHYT_RS36045 - hypothetical protein, at 36,654 to 36,911 _RS36045 BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393 _RS36050
Group Condition BPHYT_RS36030 BPHYT_RS36035 BPHYT_RS36040 BPHYT_RS36045 BPHYT_RS36050
phage 36hr PHYTO7 MOI 1 -0.5 -2.8 -0.4 N.D. +0.2
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 -1.6 -0.3 N.D. -1.0
phage 36hr PHYTO4 MOI 0.1 -0.8 -1.5 -0.3 N.D. -0.0
phage 36hr PHYTO4 MOI 1 -0.7 -1.2 -0.6 N.D. -0.0
phage 24hr PHYTO9 MOI 0.1 -0.1 -0.7 -1.5 N.D. -0.1
phage 24hr PHYTO6 MOI 1 -0.3 -0.8 -0.9 N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -1.8 -0.2 N.D. +0.6
phage 36hr PHYTO8 MOI 10 -0.6 -1.1 -0.6 N.D. +0.3
phage 24hr PHYTO11 MOI 0.1 -0.4 -0.9 -0.8 N.D. +0.2
phage P. phyto corn MOI 1 -0.3 -1.9 +0.1 N.D. +0.4
phage 24hr PHYTO8 MOI 1 -0.1 -0.6 -1.4 N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.3 -0.5 N.D. +0.4
phage P. phyto corn MOI 0.1 -0.1 -0.5 -1.3 N.D. +0.3
phage 36hr PHYTO MOI 0.1 -0.9 -0.9 +0.6 N.D. -0.4
phage 24hr PHYTO9 MOI 10 -0.5 -0.7 -0.7 N.D. +0.5
supernatant control Vogels_fungal_media 0.1X +0.8 -1.3 -0.9 N.D. +0.1
stress Chloride 200 mM -0.6 -0.9 +0.6 N.D. -0.3
carbon source Malonic (C) -0.5 +0.4 -1.0 N.D. +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.9 +0.8 N.D. -0.4
phage P. phyto PHYTO2 MOI 1 +0.3 -1.5 -0.1 N.D. +0.7
motility outer cut, LB soft agar motility assay -0.9 -0.5 +0.5 N.D. +0.3
temperature LB, 37C -0.8 +0.5 +0.5 N.D. -0.8
carbon source adipate (C) +0.2 -1.3 +0.6 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 +0.7 +0.6 N.D. -0.7
carbon source Phenylacetic 5 mM (C) -0.5 -0.2 +0.8 N.D. +0.7
carbon source succinate (C) +0.6 -0.5 +1.0 N.D. +0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 +0.2 +0.9 N.D. +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 +0.5 +0.8 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.5 +1.8 -0.1 N.D. -0.1
phage P. phyto PHYTO2 MOI 1 +0.0 +1.0 +0.6 N.D. +0.7
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BPHYT_RS36030
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BPHYT_RS36035
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