Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35775	BPHYT_RS35780	BPHYT_RS35785	BPHYT_RS35790	BPHYT_RS35795
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	-1.4	N.D.	-0.6
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	N.D.	-0.3	-1.1	N.D.	-0.4
carbon source	D-Glucose 20 mM (C)	N.D.	-0.2	-0.7	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.7	-0.3	N.D.	-0.5
carbon source	L-Fucose (C)	N.D.	-0.5	-0.9	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.5	-1.3	N.D.	+0.5
carbon source	Phenylacetic 5 mM (C)	N.D.	-0.4	+0.3	N.D.	-1.2
phage	24hr PHYTO1 MOI 10	N.D.	-0.0	-1.4	N.D.	+0.1
phage	24hr PHYTO6 MOI 10	N.D.	+0.1	-1.3	N.D.	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	-1.1	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.7	-0.9	N.D.	-0.4
phage	24hr PHYTO4 MOI 10	N.D.	+0.4	-1.1	N.D.	+0.1
phage	36hr PHYTO10 MOI 10	N.D.	+0.2	-1.0	N.D.	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	-0.5	N.D.	-0.5
nutrient	casaminos	N.D.	+0.3	-1.0	N.D.	+0.3
phage	36hr PHYTO10 MOI 10	N.D.	+0.4	-0.9	N.D.	+0.5
phage	24hr PHYTO3 MOI 10	N.D.	+0.3	+0.5	N.D.	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	+0.1	-0.7	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.7	-0.5	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.0	N.D.	+1.1
carbon source	succinate (C)	N.D.	+0.1	+1.1	N.D.	-0.4
phage	24hr PHYTO2 MOI 0.1	N.D.	+0.7	+0.8	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.6	N.D.	+0.4
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.3	+0.4	N.D.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.9	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.3	+0.7	N.D.	+0.6
phage	24hr PHYTO9 MOI 0.1	N.D.	+0.3	+0.9	N.D.	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.4	+0.7	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.8	N.D.	+0.6
carbon source	Malonic (C)	N.D.	+1.1	+1.4	N.D.	+0.5