Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35750	BPHYT_RS35755	BPHYT_RS35760	BPHYT_RS35765	BPHYT_RS35770
phage	36hr PHYTO11 MOI 1	-1.1	-0.1	-0.0	-0.7	-2.3
phage	24hr PHYTO10 MOI 10	-2.2	-0.3	-0.0	-0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.2	-0.5	-0.3	-2.1
nitrogen source	L-Glutamic (N)	-3.3	+0.2	-0.3	-0.4	+0.2
nophagecontrol	36hr Phyto Lib only	-1.0	+0.2	-0.1	-0.3	-2.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.1	-0.7	-0.2	-0.6
phage	P. phyto corn MOI 1	-3.0	+0.1	+0.2	-0.2	-0.0
carbon source	Phenylacetic 5 mM (C)	-0.0	-0.5	+0.4	-0.0	-2.6
phage	36hr PHYTO11 MOI 0.1	-1.2	+0.4	-0.2	-0.3	-1.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.1	-0.4	+0.2	+0.6	-2.0
nitrogen source	Uridine (N)	-1.7	-0.1	+0.4	+0.1	-1.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-2.2	+0.3	+0.1	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-0.1	+0.2	+0.3	-2.5
phage	24hr PHYTO7 MOI 1	+0.5	-0.1	+0.3	-0.3	-2.4
phage	24hr PHYTO MOI 0.1	-2.2	+0.0	+0.3	-0.1	+0.6
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	-1.8	+0.1	-0.4	-0.1	+1.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-2.6	+0.4	+0.3	-0.5	+1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.7	+0.5	+0.4	+0.2	+1.2
carbon source	adipate (C)	+1.3	+0.0	+0.4	+0.1	-1.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+1.4	+0.1	+0.2	+0.5	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.3	+0.2	+0.1	+0.5	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	+0.2	+0.5	-0.3	+1.7
phage	24hr PHYTO3 MOI 10	+0.5	+0.2	-0.2	-0.4	+1.9
phage	36hr PHYTO8 MOI 10	+1.2	+0.1	-0.2	-0.2	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.6	-0.1	-0.1	+1.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+1.9	+0.6	+0.1	-0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	+0.3	+0.1	+0.2	+3.3
phage	24hr PHYTO4 MOI 10	+0.7	+0.4	+0.3	+0.2	+1.9
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.6	+0.2	+0.0	+2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	+0.9	+0.6	+0.0	+2.2