Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35715	BPHYT_RS35720	BPHYT_RS35725	BPHYT_RS35730	BPHYT_RS35735
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-3.7	-0.5	-2.2	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-3.7	-1.0	+0.2	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-3.0	+0.0	-1.1	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.8	-0.8	-1.5	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.9	-1.0	-0.3	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.8	-0.7	-1.2	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.4	-1.1	-1.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.7	-0.5	-1.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-3.1	+0.1	-0.8	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-2.9	-0.6	-0.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.8	+0.6	-0.9	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-2.3	-0.3	-0.4	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-1.9	+0.1	-0.3	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.7	-0.0	-1.0	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-2.2	-0.5	-0.9	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.5	+0.7	+0.0	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.3	+0.0	-1.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.9	-0.9	-0.4	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-2.0	-0.7	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.6	+0.4	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-1.8	-0.1	-0.8	+0.5
phage	36hr PHYTO4 MOI 1	N.D.	-0.6	-0.8	+0.4	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	-0.7	-0.4	+1.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-0.1	+2.9	-1.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	+0.6	+0.6	-0.6	+1.3
motility	outer cut, LB soft agar motility assay	N.D.	-0.0	-0.4	+0.7	+1.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.3	+1.3	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.0	+2.4	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	+0.0	+1.0	+1.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.0	+1.6	+1.7