Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35695 and BPHYT_RS35700 are separated by 238 nucleotidesBPHYT_RS35700 and BPHYT_RS35705 are separated by 53 nucleotidesBPHYT_RS35705 and BPHYT_RS35710 are separated by 65 nucleotidesBPHYT_RS35710 and BPHYT_RS35715 are separated by 310 nucleotides BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613 _RS35695 BPHYT_RS35700: BPHYT_RS35700 - beta-lactamase domain-containing protein, at 3,600,852 to 3,601,811 _RS35700 BPHYT_RS35705: BPHYT_RS35705 - FAD-dependent oxidoreductase, at 3,601,865 to 3,603,574 _RS35705 BPHYT_RS35710: BPHYT_RS35710 - hypothetical protein, at 3,603,640 to 3,603,876 _RS35710 BPHYT_RS35715: BPHYT_RS35715 - hypothetical protein, at 3,604,187 to 3,604,663 _RS35715
Group Condition BPHYT_RS35695 BPHYT_RS35700 BPHYT_RS35705 BPHYT_RS35710 BPHYT_RS35715
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. -0.8 -0.5 N.D. N.D.
phage 36hr PHYTO2 MOI 1 N.D. +0.2 -1.3 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 N.D. -0.4 -0.6 N.D. N.D.
phage 24hr PHYTO7 MOI 1 N.D. -0.1 -0.9 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.9 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.4 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 -0.5 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 N.D. -0.2 -0.7 N.D. N.D.
phage 24hr PHYTO11 MOI 0.1 N.D. +0.0 -0.9 N.D. N.D.
phage 24hr PHYTO MOI 0.1 N.D. +0.1 -0.8 N.D. N.D.
phage 24hr PHYTO4 MOI 0.1 N.D. +0.2 -0.8 N.D. N.D.
phage 36hr PHYTO1 MOI 10 N.D. +0.2 -0.7 N.D. N.D.
phage 24hr PHYTO3 MOI 0.1 N.D. +0.3 -0.6 N.D. N.D.
phage 24hr PHYTO9 MOI 0.1 N.D. +0.3 -0.6 N.D. N.D.
phage 24hr PHYTO2 MOI 1 N.D. +0.3 -0.6 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.6 -0.7 N.D. N.D.
phage 24hr PHYTO4 MOI 10 N.D. +0.5 -0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 -0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.7 -0.3 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.8 -0.4 N.D. N.D.
stress Paraquat dichloride 0.064 mg/ml N.D. +0.4 +0.5 N.D. N.D.
carbon source succinate (C) N.D. +0.3 +0.6 N.D. N.D.
phage 36hr PHYTO8 MOI 10 N.D. +0.4 +0.5 N.D. N.D.
nitrogen source L-Glutamic (N) N.D. +0.7 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 +0.4 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.3 +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.7 +0.2 N.D. N.D.
temperature LB, 37C N.D. +0.6 +0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 +0.7 N.D. N.D.
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