Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35680 and BPHYT_RS35685 are separated by 173 nucleotidesBPHYT_RS35685 and BPHYT_RS35690 are separated by 12 nucleotidesBPHYT_RS35690 and BPHYT_RS35695 overlap by 4 nucleotidesBPHYT_RS35695 and BPHYT_RS35700 are separated by 238 nucleotides BPHYT_RS35680: BPHYT_RS35680 - sugar ABC transporter ATP-binding protein, at 3,596,710 to 3,597,792 _RS35680 BPHYT_RS35685: BPHYT_RS35685 - RpiR family transcriptional regulator, at 3,597,966 to 3,598,829 _RS35685 BPHYT_RS35690: BPHYT_RS35690 - IclR family transcriptional regulator, at 3,598,842 to 3,599,729 _RS35690 BPHYT_RS35695: BPHYT_RS35695 - IclR family transcriptional regulator, at 3,599,726 to 3,600,613 _RS35695 BPHYT_RS35700: BPHYT_RS35700 - beta-lactamase domain-containing protein, at 3,600,852 to 3,601,811 _RS35700
Group Condition BPHYT_RS35680 BPHYT_RS35685 BPHYT_RS35690 BPHYT_RS35695 BPHYT_RS35700
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -0.9
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. N.D. +0.4
phage 36hr PHYTO9 MOI 0.1 N.D. N.D. N.D. N.D. +0.5
phage 24hr PHYTO4 MOI 10 N.D. N.D. N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.5
stress Cobalt chloride 0.25 mM N.D. N.D. N.D. N.D. +0.5
carbon source D-Sorbitol (C) N.D. N.D. N.D. N.D. +0.5
r2a control R2A control N.D. N.D. N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.5
carbon source Gly-Glu (C) N.D. N.D. N.D. N.D. +0.5
temperature LB, 30C N.D. N.D. N.D. N.D. +0.5
pH LB, pH7 N.D. N.D. N.D. N.D. +0.5
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. N.D. +0.5
carbon source L-Fucose (C) N.D. N.D. N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.6
carbon source D-Xylose (C) N.D. N.D. N.D. N.D. +0.6
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. N.D. N.D. +0.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. +0.6
phage 24hr PHYTO6 MOI 1 N.D. N.D. N.D. N.D. +0.6
temperature LB, 37C N.D. N.D. N.D. N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.7
carbon source L-Glutamine (C) N.D. N.D. N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +0.7
nitrogen source L-Glutamic (N) N.D. N.D. N.D. N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. N.D. N.D. +0.8
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