Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35645	BPHYT_RS35650	BPHYT_RS35655	BPHYT_RS35660	BPHYT_RS35665
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.1	-1.1	-0.5	-0.8
carbon source	D-Lactate (C)	-0.6	-1.0	-0.4	-0.3	-0.4
phage	P. phyto PHYTO2 MOI 1	-0.4	-0.9	-0.7	-0.2	-0.3
carbon source	Sebacic (C)	-0.0	-0.2	-1.8	-0.2	-0.0
carbon source	D-Galactose (C)	-0.6	-0.3	-0.1	-0.3	-1.0
phage	36hr PHYTO2 MOI 1	+0.1	-0.6	-1.2	-0.0	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	-1.3	-1.2	+0.2	+0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	-0.2	-1.7	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.3	-0.8	+0.2	+0.1
phage	24hr PHYTO7 MOI 10	-0.4	-0.9	-0.4	+0.4	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.3	-1.6	-0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.7	-1.4	-0.5	-0.2
motility	outer cut, LB soft agar motility assay	+0.3	-1.0	-0.7	-0.3	+0.6
phage	36hr PHYTO4 MOI 1	+0.1	-0.1	-1.6	+0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.9	-1.1	+0.0	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-0.4	+1.1	-0.8	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.5	-0.7	-1.0	+0.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-1.0	+0.1	-0.7	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.4	-1.3	+0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	+0.7	+0.5	-0.3
carbon source	D-Galacturonic Acid (C)	-0.1	-0.6	+1.1	-0.7	+0.3
phage	24hr PHYTO6 MOI 1	-0.1	-1.2	+0.8	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+1.2	-1.7	+0.1	+1.1
carbon source	Phenylacetic 5 mM (C)	-0.4	+0.4	+1.0	+0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.6	-0.8	+0.2	+1.0
motility	outer cut, LB soft agar motility assay	+1.0	-0.2	+0.7	+0.2	+0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.1	+1.1	+1.0	+0.0	-0.2
stress	Paraquat dichloride 0.064 mg/ml	+1.4	-0.4	+1.2	+0.0	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.5	+0.3	+0.2	+0.9
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	+0.5	+1.0	+0.4	+0.3