Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35560	BPHYT_RS35565	BPHYT_RS35570	BPHYT_RS35575	BPHYT_RS35580
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.6	-1.1	+0.5	-0.6
phage	36hr PHYTO10 MOI 10	-0.4	-1.0	-0.2	-0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+0.5	-0.9	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	-0.2	-0.9	+0.8	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.5	-0.4	+0.3	-0.7
phage	36hr PHYTO2 MOI 1	+0.1	-1.5	+0.1	+0.1	-0.5
phage	36hr PHYTO8 MOI 10	+0.6	-0.7	-0.2	-0.7	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	+0.1	-0.9	-0.4	+0.4
phage	24hr PHYTO MOI 0.1	+0.4	-0.9	-0.5	-0.3	-0.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.7	-0.9	-0.4	-0.0
phage	24hr PHYTO9 MOI 10	+0.6	-1.1	-0.7	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.3	-0.1	+0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.2	-0.5	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.1	-0.3	+0.8	-0.7
phage	24hr PHYTO3 MOI 10	+0.6	-1.1	-0.5	-0.1	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.5	-0.5	+0.1	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.8	-0.2	-1.0	+0.2	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	+0.5	+0.8	-0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	-0.2	-0.8	-0.1	+0.5
carbon source	D-Glucose (C)	-0.5	+0.7	-0.6	+0.3	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.5	-0.8	+0.0	+0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.4	-0.8	-0.1	+0.5
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.7	+0.4	-0.1	-0.4	+0.7
carbon source	Malonic (C)	+1.7	+0.1	-0.2	+0.4	+0.1
phage	24hr PHYTO2 MOI 0.1	+1.0	+0.2	+0.5	+0.6	-0.2
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.5	-0.1	+0.7	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+1.4	-0.0	-0.3	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+1.7	+0.2	-0.5	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+2.1	-0.1	-0.1	+0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+2.2	+0.2	-0.3	+0.7	+0.2