Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35470 and BPHYT_RS35475 overlap by 4 nucleotidesBPHYT_RS35475 and BPHYT_RS35480 overlap by 4 nucleotidesBPHYT_RS35480 and BPHYT_RS35485 are separated by 293 nucleotidesBPHYT_RS35485 and BPHYT_RS35490 are separated by 299 nucleotides BPHYT_RS35470: BPHYT_RS35470 - MarR family transcriptional regulator, at 3,558,214 to 3,558,777 _RS35470 BPHYT_RS35475: BPHYT_RS35475 - 3-hydroxyacyl-CoA dehydrogenase, at 3,558,774 to 3,559,547 _RS35475 BPHYT_RS35480: BPHYT_RS35480 - salicylyl-CoA 5-hydroxylase, at 3,559,544 to 3,561,916 _RS35480 BPHYT_RS35485: BPHYT_RS35485 - hypothetical protein, at 3,562,210 to 3,563,556 _RS35485 BPHYT_RS35490: BPHYT_RS35490 - hypothetical protein, at 3,563,856 to 3,564,416 _RS35490
Group Condition BPHYT_RS35470 BPHYT_RS35475 BPHYT_RS35480 BPHYT_RS35485 BPHYT_RS35490
phage 36hr PHYTO11 MOI 1 N.D. N.D. -4.4 +0.2 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.5 -0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 -0.3 -0.1
phage P. phyto corn MOI 1 N.D. N.D. -2.3 -0.1 -0.1
carbon source succinate (C) N.D. N.D. -1.2 -0.7 -0.4
phage 36hr PHYTO2 MOI 1 N.D. N.D. -2.0 -0.1 -0.0
carbon source L-Tryptophan (C) N.D. N.D. -2.0 +0.1 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.1 -0.6 -0.2
vitamin No vitamins t2 N.D. N.D. -1.4 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.5 -0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.9 -0.6 -0.1
nutrient L-Histidine N.D. N.D. -1.4 -0.2 +0.1
phage 24hr PHYTO MOI 0.1 N.D. N.D. -1.6 -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.2 +0.1 -0.3
nitrogen source Putrescine (N) N.D. N.D. -1.3 +0.4 -0.2
phage 36hr PHYTO2 MOI 1 N.D. N.D. -0.8 -0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -1.0 +0.0 +0.6
phage 36hr PHYTO MOI 0.1 N.D. N.D. +0.7 -0.8 -0.1
phage 36hr PHYTO10 MOI 10 N.D. N.D. +1.1 -0.4 -0.3
phage 24hr PHYTO4 MOI 10 N.D. N.D. +1.1 -0.1 -0.4
phage 36hr PHYTO11 MOI 0.1 N.D. N.D. +1.1 -0.6 +0.1
carbon source Tween 20 (C) N.D. N.D. +1.2 -0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +1.2 +0.3 -0.7
phage 36hr PHYTO6 MOI 1 N.D. N.D. +1.0 -0.2 +0.4
phage 36hr PHYTO4 MOI 1 N.D. N.D. +1.6 -0.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +1.7 +0.5 -0.2
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. +0.9 +0.8 +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. +0.9 +1.1 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. +2.0 +0.0 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.5 +1.1 +0.2
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BPHYT_RS35470
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BPHYT_RS35475
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