Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35445 and BPHYT_RS35450 are separated by 71 nucleotidesBPHYT_RS35450 and BPHYT_RS35455 overlap by 4 nucleotidesBPHYT_RS35455 and BPHYT_RS35460 overlap by 4 nucleotidesBPHYT_RS35460 and BPHYT_RS35465 are separated by 1 nucleotides BPHYT_RS35445: BPHYT_RS35445 - 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data), at 3,553,581 to 3,555,221 _RS35445 BPHYT_RS35450: BPHYT_RS35450 - endoribonuclease L-PSP, at 3,555,293 to 3,555,688 _RS35450 BPHYT_RS35455: BPHYT_RS35455 - 4-hydroxybenzoyl-CoA thioesterase, at 3,555,685 to 3,556,128 _RS35455 BPHYT_RS35460: BPHYT_RS35460 - acyl-CoA dehydrogenase, at 3,556,125 to 3,557,333 _RS35460 BPHYT_RS35465: BPHYT_RS35465 - enoyl-CoA hydratase, at 3,557,335 to 3,558,186 _RS35465
Group Condition BPHYT_RS35445 BPHYT_RS35450 BPHYT_RS35455 BPHYT_RS35460 BPHYT_RS35465
carbon source L-Tryptophan (C) -2.0 N.D. N.D. -3.8 -2.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. N.D. -0.4 -0.7
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -0.1 N.D. N.D. -0.9 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. -0.5 -1.4
nophagecontrol 36hr Phyto Lib Only -0.1 N.D. N.D. -1.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 N.D. N.D. -0.5 -0.8
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 N.D. N.D. -0.9 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. N.D. -0.2 -0.8
phage 36hr PHYTO11 MOI 1 -0.1 N.D. N.D. -0.9 -0.2
nitrogen source L-Serine (N) +0.1 N.D. N.D. -0.2 -0.9
carbon source D-Glucose (C) -0.6 N.D. N.D. -0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 N.D. N.D. -0.4 -0.6
nophagecontrol 36hr Phyto Lib Only -0.0 N.D. N.D. -0.9 +0.2
phage 36hr PHYTO6 MOI 10 -0.1 N.D. N.D. +0.3 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. +0.1 -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. N.D. -0.7 +0.3
nitrogen source NAG (N) -0.4 N.D. N.D. +0.4 -0.3
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. N.D. +0.9 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 N.D. N.D. +0.3 -0.8
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.3 N.D. N.D. -0.6 +0.9
phage 36hr PHYTO6 MOI 1 -0.5 N.D. N.D. +0.1 +0.5
carbon source Suberic (C) -0.5 N.D. N.D. +0.6 +0.1
nitrogen source L-Phenylalanine (N) -0.3 N.D. N.D. +0.6 +0.3
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.1 N.D. N.D. +0.8 -0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X -0.2 N.D. N.D. +0.6 +0.3
carbon source adipate (C) -0.1 N.D. N.D. +0.6 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. N.D. +0.1 +1.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. N.D. +0.7 +0.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 N.D. N.D. +0.8 +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 N.D. N.D. +0.4 +0.3
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