Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35435 and BPHYT_RS35440 are separated by 73 nucleotidesBPHYT_RS35440 and BPHYT_RS35445 are separated by 29 nucleotidesBPHYT_RS35445 and BPHYT_RS35450 are separated by 71 nucleotidesBPHYT_RS35450 and BPHYT_RS35455 overlap by 4 nucleotides BPHYT_RS35435: BPHYT_RS35435 - glutathione S-transferase, at 3,551,577 to 3,552,254 _RS35435 BPHYT_RS35440: BPHYT_RS35440 - carboxymethylenebutenolidase, at 3,552,328 to 3,553,551 _RS35440 BPHYT_RS35445: BPHYT_RS35445 - 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data), at 3,553,581 to 3,555,221 _RS35445 BPHYT_RS35450: BPHYT_RS35450 - endoribonuclease L-PSP, at 3,555,293 to 3,555,688 _RS35450 BPHYT_RS35455: BPHYT_RS35455 - 4-hydroxybenzoyl-CoA thioesterase, at 3,555,685 to 3,556,128 _RS35455
Group Condition BPHYT_RS35435 BPHYT_RS35440 BPHYT_RS35445 BPHYT_RS35450 BPHYT_RS35455
carbon source L-Tryptophan (C) -0.5 -0.1 -2.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.3 -0.2 N.D. N.D.
phage 36hr PHYTO7 MOI 0.1 -1.1 -0.3 +0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.4 -0.5 N.D. N.D.
nitrogen source NAG (N) -0.6 -0.1 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 -0.6 -0.2 N.D. N.D.
carbon source Suberic (C) -0.4 -0.2 -0.5 N.D. N.D.
carbon source Sebacic (C) -0.3 -0.1 -0.5 N.D. N.D.
phage 24hr PHYTO10 MOI 10 -0.9 +0.2 -0.2 N.D. N.D.
phage 36hr PHYTO6 MOI 1 -0.3 -0.0 -0.5 N.D. N.D.
carbon source D-Glucose (C) -0.5 +0.2 -0.6 N.D. N.D.
phage P. phyto PHYTO2 MOI 1 -0.7 +0.1 -0.2 N.D. N.D.
nitrogen source L-Citrulline (N) -0.9 -0.0 +0.2 N.D. N.D.
phage 36hr PHYTO1 MOI 10 -1.0 +0.0 +0.2 N.D. N.D.
phage 36hr PHYTO11 MOI 0.1 -0.8 +0.2 -0.1 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 -0.8 -0.0 +0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.2 -0.6 N.D. N.D.
phage 36hr PHYTO2 MOI 1 -0.7 +0.2 -0.1 N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 +0.4 -0.3 N.D. N.D.
phage 24hr PHYTO6 MOI 1 -0.6 +0.0 +0.4 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 +0.0 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -0.1 +0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 -0.3 +0.2 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.2 -0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -0.3 +0.3 N.D. N.D.
phage 24hr PHYTO8 MOI 1 +0.5 +0.1 +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.3 +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.0 +0.3 +0.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.2 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 -0.1 +1.1 N.D. N.D.
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