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Protein
Homologs
Fitness for 5 genes in
Burkholderia phytofirmans PsJN
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BPHYT_RS35435 and BPHYT_RS35440 are separated by 73 nucleotides
BPHYT_RS35440 and BPHYT_RS35445 are separated by 29 nucleotides
BPHYT_RS35445 and BPHYT_RS35450 are separated by 71 nucleotides
BPHYT_RS35450 and BPHYT_RS35455 overlap by 4 nucleotides
BPHYT_RS35435: BPHYT_RS35435 - glutathione S-transferase, at 3,551,577 to 3,552,254
_RS35435
BPHYT_RS35440: BPHYT_RS35440 - carboxymethylenebutenolidase, at 3,552,328 to 3,553,551
_RS35440
BPHYT_RS35445: BPHYT_RS35445 - 2-aminobenzoate-CoA ligase [EC: 6.2.1.32]
(from data)
, at 3,553,581 to 3,555,221
_RS35445
BPHYT_RS35450: BPHYT_RS35450 - endoribonuclease L-PSP, at 3,555,293 to 3,555,688
_RS35450
BPHYT_RS35455: BPHYT_RS35455 - 4-hydroxybenzoyl-CoA thioesterase, at 3,555,685 to 3,556,128
_RS35455
Group
Condition
BPHYT
_RS35435
BPHYT
_RS35440
BPHYT
_RS35445
BPHYT
_RS35450
BPHYT
_RS35455
carbon source
L-Tryptophan (C)
-0.5
-0.1
-2.0
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.8
-0.3
-0.2
N.D.
N.D.
phage
36hr PHYTO7 MOI 0.1
-1.1
-0.3
+0.1
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
-0.4
-0.5
N.D.
N.D.
nitrogen source
NAG (N)
-0.6
-0.1
-0.4
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
-0.3
-0.6
-0.2
N.D.
N.D.
carbon source
Suberic (C)
-0.4
-0.2
-0.5
N.D.
N.D.
carbon source
Sebacic (C)
-0.3
-0.1
-0.5
N.D.
N.D.
phage
24hr PHYTO10 MOI 10
-0.9
+0.2
-0.2
N.D.
N.D.
phage
36hr PHYTO6 MOI 1
-0.3
-0.0
-0.5
N.D.
N.D.
carbon source
D-Glucose (C)
-0.5
+0.2
-0.6
N.D.
N.D.
phage
P. phyto PHYTO2 MOI 1
-0.7
+0.1
-0.2
N.D.
N.D.
nitrogen source
L-Citrulline (N)
-0.9
-0.0
+0.2
N.D.
N.D.
phage
36hr PHYTO1 MOI 10
-1.0
+0.0
+0.2
N.D.
N.D.
phage
36hr PHYTO11 MOI 0.1
-0.8
+0.2
-0.1
N.D.
N.D.
phage
24hr PHYTO6 MOI 0.1
-0.8
-0.0
+0.1
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+0.3
-0.2
-0.6
N.D.
N.D.
phage
36hr PHYTO2 MOI 1
-0.7
+0.2
-0.1
N.D.
N.D.
carbon source
2-Deoxy-D-ribonic lithium salt (C)
-0.6
+0.4
-0.3
N.D.
N.D.
phage
24hr PHYTO6 MOI 1
-0.6
+0.0
+0.4
N.D.
N.D.
in planta
Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
+0.4
+0.0
-0.6
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.5
-0.1
+0.7
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+0.7
-0.3
+0.2
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.2
-0.1
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
+0.8
-0.3
+0.3
N.D.
N.D.
phage
24hr PHYTO8 MOI 1
+0.5
+0.1
+0.3
N.D.
N.D.
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
+0.2
+0.3
+0.5
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
+0.0
+0.3
+0.7
N.D.
N.D.
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.5
+0.2
+0.4
N.D.
N.D.
in planta
Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
+0.9
-0.1
+1.1
N.D.
N.D.
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