Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35325	BPHYT_RS35330	BPHYT_RS35335	BPHYT_RS35340	BPHYT_RS35345
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	N.D.	-0.2	-0.7	-1.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.3	N.D.	-0.2	-0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	+0.3	-0.9	-0.9
nutrient	Min media with glucose	-0.3	N.D.	-0.3	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	N.D.	-0.7	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	N.D.	-1.0	+0.3	+0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	N.D.	-0.4	-0.8	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	N.D.	-0.2	-0.3	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.8	N.D.	-0.0	-0.3	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	N.D.	-0.6	-0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	N.D.	-0.6	-0.6	+0.2
phage	24hr PHYTO MOI 0.1	+0.4	N.D.	-0.2	-1.0	+0.1
carbon source	Phenylacetic 5 mM (C)	+0.2	N.D.	-0.5	+0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.4	N.D.	+0.4	-0.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	N.D.	-0.8	+0.8	-0.5
phage	36hr PHYTO2 MOI 1	+0.4	N.D.	+0.7	-0.3	-0.7
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.1	N.D.	+0.6	-1.0	+0.3
nitrogen source	L-Proline (N)	-0.4	N.D.	-0.4	+0.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	N.D.	+0.4	-0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	N.D.	-0.7	+0.9	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	N.D.	-0.6	+0.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	N.D.	-0.6	+0.2	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	N.D.	-0.6	+0.0	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	N.D.	+0.3	+0.6	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.0	N.D.	+1.0	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	N.D.	+0.6	+0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	N.D.	+0.0	+0.6	+0.7
phage	24hr PHYTO2 MOI 0.1	+0.3	N.D.	+0.6	-0.5	+0.6
phage	36hr PHYTO10 MOI 10	+0.3	N.D.	+0.8	-0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	-0.2	+0.3	+0.9