Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS35270	BPHYT_RS35275	BPHYT_RS35280	BPHYT_RS35285	BPHYT_RS35290
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	-3.3	-0.4	-0.3	-0.8
phage	24hr PHYTO11 MOI 1	-0.6	-1.2	-0.3	-0.1	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-1.4	+0.1	-0.5	-0.1
phage	24hr PHYTO6 MOI 0.1	-0.7	-1.4	-0.2	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-3.0	+0.0	+0.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.6	-0.5	-0.1	-0.2
phage	24hr PHYTO6 MOI 1	-0.6	-0.3	-0.3	-0.1	-0.9
phage	24hr PHYTO2 MOI 0.1	-0.8	-1.4	-0.3	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-2.1	-0.3	-0.2	-0.0
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.4	-0.9	+0.1	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.6	+0.5	-0.2	-0.3
phage	P. phyto PHYTO2 MOI 1	-1.0	+0.7	-0.5	-0.1	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.5	+0.3	+0.1	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	-2.2	+0.1	+0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	-1.2	-0.7	+0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-1.6	+0.4	+0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.5	+0.1	-0.4	+0.8
nitrogen source	L-Alanine (N)	-0.0	+0.8	-0.2	-0.3	-0.8
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	+1.1	-0.8	+0.4	+0.0
phage	36hr PHYTO6 MOI 0.1	-0.3	+0.9	-0.5	-0.6	+0.7
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.4	+1.3	+0.0	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	-0.2	-0.2	+0.3	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	+1.6	+0.3	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+1.5	+0.1	+0.0	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+1.5	+0.5	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+1.7	+0.0	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+1.5	-0.0	+0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+2.2	+0.2	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+2.4	+0.0	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+2.2	+0.3	+0.3	-0.2