Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35225	BPHYT_RS35230	BPHYT_RS35235	BPHYT_RS35240	BPHYT_RS35245
carbon source	Phenylacetic 5 mM (C)	+0.2	-3.8	+0.5	+0.2	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	-0.9	+0.1	-0.1	-1.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.3	-1.6	+0.3	-0.4	-1.4
phage	24hr PHYTO2 MOI 0.1	+0.3	-0.8	-1.7	-0.3	-0.2
temperature	LB, 23C	+0.1	-1.2	-0.5	+0.1	-1.0
phage	36hr PHYTO1 MOI 1	-0.3	-0.6	-1.6	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	-0.6	-0.3	-0.5	-1.5
nitrogen source	L-Lysine (N)	+0.2	-2.0	-0.3	-0.1	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	+0.5	-0.4	-0.1	-1.6
carbon source	D-Glucose (C)	-0.3	+1.0	-1.5	-0.0	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-2.7	-0.0	+0.4	+0.5
phage	24hr PHYTO4 MOI 10	+0.4	-0.9	-1.3	+0.0	+0.4
phage	P. phyto PHYTO2 MOI 1	+0.4	-0.7	-1.0	-0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.0	+0.5	-0.5	-1.6
motility	outer cut, LB soft agar motility assay	+0.0	+1.3	-0.6	-0.4	-0.8
phage	36hr PHYTO11 MOI 0.1	+0.1	+0.9	-1.2	-0.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	+1.2	-0.4	-0.2	-1.0
phage	24hr PHYTO7 MOI 1	+0.5	+0.7	-1.2	-0.0	-0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.2	+0.9	+0.3	-0.1	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+1.6	-0.2	+0.4	-2.0
phage	24hr PHYTO2 MOI 1	-0.6	+0.8	-0.3	-0.4	+0.8
phage	24hr PHYTO3 MOI 1	-0.2	-0.9	+0.6	-0.1	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.4	-0.9	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+1.1	-0.6	+0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+2.1	+0.1	+0.4	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+1.2	+0.4	+0.0	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+2.2	+0.0	-0.1	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.3	+2.0	+0.3	+0.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+1.9	+0.4	-0.2	+0.3
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+1.5	+0.2	+0.3	+0.7