Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS35155 and BPHYT_RS35160 are separated by 69 nucleotidesBPHYT_RS35160 and BPHYT_RS35165 overlap by 4 nucleotidesBPHYT_RS35165 and BPHYT_RS35170 are separated by 350 nucleotidesBPHYT_RS35170 and BPHYT_RS35175 are separated by 107 nucleotides BPHYT_RS35155: BPHYT_RS35155 - TonB-denpendent receptor, at 3,491,074 to 3,493,272 _RS35155 BPHYT_RS35160: BPHYT_RS35160 - PKHD-type hydroxylase, at 3,493,342 to 3,494,025 _RS35160 BPHYT_RS35165: BPHYT_RS35165 - peptidase, at 3,494,022 to 3,494,744 _RS35165 BPHYT_RS35170: BPHYT_RS35170 - chemotaxis protein CheY, at 3,495,095 to 3,500,014 _RS35170 BPHYT_RS35175: BPHYT_RS35175 - nitroreductase, at 3,500,122 to 3,500,811 _RS35175
Group Condition BPHYT_RS35155 BPHYT_RS35160 BPHYT_RS35165 BPHYT_RS35170 BPHYT_RS35175
nitrogen source L-Citrulline (N) -1.0 -1.2 +0.1 -0.0 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.2 -1.2 -0.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.3 -0.4 -0.8 +0.2 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.0 +0.4 -1.0 +0.5 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.1 +0.8 -0.6 +0.1 -0.3
nitrogen source L-Asparagine (N) -0.1 -0.6 +0.9 +0.0 -0.1
vitamin No vitamins t2 -0.5 +0.6 +0.6 +0.0 -0.2
motility outer cut, LB soft agar motility assay -0.2 +0.1 +1.1 -0.3 +0.2
phage 24hr PHYTO3 MOI 10 -0.2 +0.2 +1.5 +0.0 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -1.1 +0.7 +0.3 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.2 +0.8 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.4 +0.8 +0.1 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.7 +1.9 -0.1 +0.1
nitrogen source D-Alanine (N) +0.4 +0.5 +0.7 -0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +2.0 -0.1 +0.1 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 +0.2 +1.4 +0.0 -0.1
phage 24hr PHYTO9 MOI 10 +0.2 +0.6 +1.0 +0.0 -0.0
carbon source Suberic (C) +0.0 +0.7 +0.6 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.8 +0.5 -0.1 +0.3
phage 36hr PHYTO2 MOI 1 +0.0 +0.7 +0.9 +0.1 +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.1 +0.6 +1.1 -0.1 +0.0
phage 36hr PHYTO8 MOI 10 +0.0 +0.2 +1.3 +0.1 +0.3
phage 36hr PHYTO4 MOI 1 +0.3 +0.6 +0.6 +0.2 +0.6
phage 36hr PHYTO7 MOI 1 +0.2 +0.7 +0.9 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +1.2 +0.8 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.8 +1.0 +0.1 +0.2
phage PHYTO3 MOI 0.1 +0.2 +0.4 +1.3 +0.2 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.1 +0.1 +0.2 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.7 +1.0 +0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.2 +1.4 +0.1 +0.1
remove
BPHYT_RS35155
plot		 remove
BPHYT_RS35160
plot		 remove
BPHYT_RS35165		 remove
BPHYT_RS35170
plot		 remove
BPHYT_RS35175
plot