Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS35055 and BPHYT_RS35060 are separated by 49 nucleotidesBPHYT_RS35060 and BPHYT_RS35065 are separated by 165 nucleotidesBPHYT_RS35065 and BPHYT_RS35075 are separated by 654 nucleotidesBPHYT_RS35075 and BPHYT_RS35080 are separated by 31 nucleotides BPHYT_RS35055: BPHYT_RS35055 - cytochrome B561, at 3,467,540 to 3,468,139 _RS35055 BPHYT_RS35060: BPHYT_RS35060 - glycosyl transferase, at 3,468,189 to 3,469,640 _RS35060 BPHYT_RS35065: BPHYT_RS35065 - Rieske (2Fe-2S) protein, at 3,469,806 to 3,471,026 _RS35065 BPHYT_RS35075: BPHYT_RS35075 - rubredoxin, at 3,471,681 to 3,471,827 _RS35075 BPHYT_RS35080: BPHYT_RS35080 - short-chain dehydrogenase, at 3,471,859 to 3,472,713 _RS35080
Group Condition BPHYT_RS35055 BPHYT_RS35060 BPHYT_RS35065 BPHYT_RS35075 BPHYT_RS35080
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.5 +0.1 N.D. -1.1
phage P. phyto PHYTO2 MOI 1 -0.4 -0.5 -0.1 N.D. -0.6
phage 24hr PHYTO2 MOI 1 -0.2 -0.1 -0.3 N.D. -0.9
phage 36hr PHYTO2 MOI 1 -0.7 +0.1 -0.2 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.9 -0.0 N.D. -0.5
phage 36hr PHYTO6 MOI 10 -0.2 +0.4 -0.4 N.D. -0.9
phage 36hr PHYTO3 MOI 1 -0.5 +0.2 -0.3 N.D. -0.5
phage 36hr PHYTO4 MOI 1 -0.4 +0.3 -0.1 N.D. -0.8
phage 24hr PHYTO9 MOI 0.1 -0.1 +0.3 -0.5 N.D. -0.7
phage P. phyto PHYTO2 MOI 1 -0.1 +0.4 -0.1 N.D. -1.1
phage 24hr PHYTO MOI 0.1 -0.4 +0.5 -0.3 N.D. -0.6
phage 36hr PHYTO8 MOI 0.1 -0.2 +0.4 -0.2 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.6 +0.2 N.D. -0.4
phage 36hr PHYTO2 MOI 1 -0.2 +0.5 -0.3 N.D. -0.6
phage PHYTO3 MOI 0.1 -0.3 +0.7 -0.1 N.D. -0.8
carbon source Phenylacetic 5 mM (C) +0.3 +0.2 +0.2 N.D. -1.0
phage 36hr PHYTO11 MOI 0.1 -0.1 +0.8 -0.0 N.D. -0.9
phage 24hr PHYTO7 MOI 10 -0.6 +0.2 -0.5 N.D. +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.0 -0.0 +0.1 N.D. +0.8
nitrogen source L-Serine (N) +0.4 +0.3 -0.1 N.D. -0.7
phage 36hr PHYTO4 MOI 1 -0.5 +0.6 -0.2 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.4 +0.0 N.D. -0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.3 -0.5 -0.3 N.D. +1.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.2 +0.0 N.D. -1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.0 -0.1 N.D. +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.5 +0.5 N.D. +0.1
supernatant control Vogels_fungal_media; pH 5.5 -0.1 +0.6 +0.0 N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.3 -0.4 +0.3 N.D. +1.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.4 +1.0 +0.4 N.D. +0.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +1.0 +0.2 N.D. +0.4
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BPHYT_RS35055
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BPHYT_RS35060
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