Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS35045	BPHYT_RS35050	BPHYT_RS35055	BPHYT_RS35060	BPHYT_RS35065
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.6	-0.3	-0.2	-0.9	+0.1
phage	24hr PHYTO3 MOI 10	-0.5	-0.5	-0.5	-0.1	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.3	-0.2	-0.4	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.1	-0.4	+0.0	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.1	-1.0	-0.0	+0.1
phage	24hr PHYTO7 MOI 10	-0.3	+0.1	-0.6	+0.2	-0.5
phage	36hr PHYTO6 MOI 10	-0.7	-0.0	-0.2	+0.4	-0.4
carbon source	propionate (C)	+0.4	-0.1	-0.1	-0.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.3	-0.1	-0.5	+0.1
phage	24hr PHYTO MOI 0.1	-0.3	-0.0	-0.4	+0.5	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.2	+0.1	-0.2	+0.4
phage	24hr PHYTO MOI 0.1	-0.6	-0.3	+0.0	+0.6	-0.1
phage	36hr PHYTO8 MOI 10	-0.4	+0.1	-0.1	+0.6	-0.4
phage	36hr PHYTO4 MOI 1	+0.0	-0.1	-0.5	+0.6	-0.2
phage	36hr PHYTO3 MOI 1	+0.1	+0.3	-0.5	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.3	-0.1	+0.4	-0.2
phage	36hr PHYTO2 MOI 1	+0.5	+0.2	-0.7	+0.1	-0.2
nophagecontrol	36hr Phyto Lib only	-0.4	-0.2	-0.2	+0.8	-0.0
phage	36hr PHYTO11 MOI 0.1	-0.5	-0.1	-0.1	+0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.1	-0.6	+0.5	+0.5
vitamin	With vitamins t1	+0.4	-0.4	+0.1	+0.8	-0.4
nitrogen source	L-Serine (N)	-0.4	+0.4	+0.4	+0.3	-0.1
vitamin	No vitamins t2	+0.4	-0.1	+0.1	+0.5	-0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.0	+0.1	+1.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.3	+0.5	-0.2	+0.1
carbon source	Malonic (C)	+0.6	+0.5	+0.3	+0.1	-0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	+0.0	+1.1	-0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.1	+0.4	+1.0	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	-0.1	+0.3	+1.0	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.7	-0.3	+0.3	+0.1