Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS34960	BPHYT_RS34965	BPHYT_RS34970	BPHYT_RS34975	BPHYT_RS34980
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	-0.6	-1.0	-0.3
vitamin	With vitamins t2	N.D.	N.D.	-0.5	-0.9	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	-2.1	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.5	-0.9	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	N.D.	-1.0	+0.8	-0.8
nitrogen source	NAG (N)	N.D.	N.D.	+0.4	-1.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.5	-0.8	-0.4
phage	24hr PHYTO3 MOI 10	N.D.	N.D.	-1.0	+0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	+0.5	-0.6	-0.5
nitrogen source	Uridine (N)	N.D.	N.D.	+0.2	-1.0	+0.3
nutrient	L-Histidine	N.D.	N.D.	-1.0	+0.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.7	-0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	+1.4	-0.5	-0.8
nitrogen source	L-Glutamic (N)	N.D.	N.D.	-0.5	+0.8	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	+0.3	+1.0	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	+1.4	-0.4	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	+0.9	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	+1.0	-0.5	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.2	+1.4	-0.4
phage	24hr PHYTO2 MOI 1	N.D.	N.D.	+1.0	-0.4	+0.2
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	+0.2	+1.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.7	+0.6	-0.2
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.6	+0.4	+0.3
phage	PHYTO3 MOI 0.1	N.D.	N.D.	+0.9	+0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.2	+1.1	+0.3
carbon source	Suberic (C)	N.D.	N.D.	+0.2	+1.2	+0.2
carbon source	Phenylacetic 5 mM (C)	N.D.	N.D.	+0.4	+0.7	+0.6
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.4	+1.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.1	+1.3	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.9	+1.0	+0.2