Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34950 and BPHYT_RS34955 are separated by 45 nucleotidesBPHYT_RS34955 and BPHYT_RS34960 are separated by 0 nucleotidesBPHYT_RS34960 and BPHYT_RS34965 overlap by 1 nucleotidesBPHYT_RS34965 and BPHYT_RS34970 overlap by 8 nucleotides BPHYT_RS34950: BPHYT_RS34950 - cupin, at 3,441,247 to 3,441,774 _RS34950 BPHYT_RS34955: BPHYT_RS34955 - alpha/beta hydrolase, at 3,441,820 to 3,442,710 _RS34955 BPHYT_RS34960: BPHYT_RS34960 - IclR family transcriptional regulator, at 3,442,711 to 3,443,595 _RS34960 BPHYT_RS34965: BPHYT_RS34965 - short-chain dehydrogenase, at 3,443,595 to 3,444,392 _RS34965 BPHYT_RS34970: BPHYT_RS34970 - hypothetical protein, at 3,444,385 to 3,446,043 _RS34970
Group Condition BPHYT_RS34950 BPHYT_RS34955 BPHYT_RS34960 BPHYT_RS34965 BPHYT_RS34970
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. N.D. -2.1
carbon source Tween 20 (C) N.D. N.D. N.D. N.D. -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. -1.0
nutrient L-Histidine N.D. N.D. N.D. N.D. -1.0
phage 24hr PHYTO3 MOI 10 N.D. N.D. N.D. N.D. -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. N.D. N.D. -0.9
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. N.D. N.D. -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. N.D. -0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. -0.7
nutrient L-Histidine N.D. N.D. N.D. N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. N.D. -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. N.D. N.D. +0.6
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. N.D. +0.6
stress Bacitracin 0.25 mg/ml N.D. N.D. N.D. N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.7
phage 24hr PHYTO7 MOI 10 N.D. N.D. N.D. N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.7
carbon source D-Glucose 20 mM (C) N.D. N.D. N.D. N.D. +0.7
nophagecontrol 24hr Phyto Lib Only N.D. N.D. N.D. N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.8
phage 24hr PHYTO3 MOI 0.1 N.D. N.D. N.D. N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. N.D. N.D. +0.9
phage 24hr PHYTO4 MOI 10 N.D. N.D. N.D. N.D. +0.9
phage PHYTO3 MOI 0.1 N.D. N.D. N.D. N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. N.D. +0.9
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. N.D. N.D. +1.0
phage 24hr PHYTO2 MOI 1 N.D. N.D. N.D. N.D. +1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. N.D. +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. N.D. +1.4
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