Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34790 and BPHYT_RS34795 are separated by 3 nucleotidesBPHYT_RS34795 and BPHYT_RS34800 are separated by 145 nucleotidesBPHYT_RS34800 and BPHYT_RS34805 are separated by 138 nucleotidesBPHYT_RS34805 and BPHYT_RS34810 are separated by 2 nucleotides BPHYT_RS34790: BPHYT_RS34790 - squalene--hopene cyclase, at 3,409,083 to 3,411,113 _RS34790 BPHYT_RS34795: BPHYT_RS34795 - hypothetical protein, at 3,411,117 to 3,411,848 _RS34795 BPHYT_RS34800: BPHYT_RS34800 - thioesterase, at 3,411,994 to 3,412,473 _RS34800 BPHYT_RS34805: BPHYT_RS34805 - ABC transporter, at 3,412,612 to 3,413,634 _RS34805 BPHYT_RS34810: BPHYT_RS34810 - RND transporter, at 3,413,637 to 3,416,252 _RS34810
Group Condition BPHYT_RS34790 BPHYT_RS34795 BPHYT_RS34800 BPHYT_RS34805 BPHYT_RS34810
stress Bacitracin 0.25 mg/ml N.D. N.D. +0.0 -5.2 -7.0
pH LB, pH4 N.D. N.D. -0.1 -5.5 -5.2
pH LB, pH4 N.D. N.D. +0.1 -4.1 -5.2
stress Bacitracin 0.125 mg/ml N.D. N.D. -0.0 -3.1 -5.1
stress Lomefloxacin 0.001 mM N.D. N.D. +0.4 -3.4 -3.4
phage PHYTO3 MOI 0.1 N.D. N.D. +0.7 -1.9 -4.3
phage 36hr PHYTO8 MOI 10 N.D. N.D. -0.6 -0.6 -3.7
phage 36hr PHYTO3 MOI 1 N.D. N.D. -0.3 -0.5 -4.1
phage 24hr PHYTO2 MOI 0.1 N.D. N.D. -0.2 -0.6 -4.0
stress Cephalothin 2 mg/ml N.D. N.D. +0.2 -2.4 -2.6
phage 36hr PHYTO2 MOI 1 N.D. N.D. -0.9 -2.0 -1.9
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.2 -1.4 -3.2
phage 24hr PHYTO3 MOI 10 N.D. N.D. -0.5 -1.1 -2.6
phage 36hr PHYTO2 MOI 1 N.D. N.D. -0.6 -0.8 -2.5
phage 36hr PHYTO3 MOI 1 N.D. N.D. -0.0 -1.0 -2.8
phage 24hr PHYTO11 MOI 1 N.D. N.D. -0.3 -0.7 -2.7
motility outer cut, LB soft agar motility assay N.D. N.D. +0.1 -1.6 -2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. -0.3 -2.3 -1.0
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -0.1 -1.8 -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.2 -1.8 -1.5
phage 36hr PHYTO8 MOI 10 N.D. N.D. -0.1 -1.5 -1.8
phage 24hr PHYTO7 MOI 1 N.D. N.D. -0.2 -0.8 -2.4
motility inner cut, LB soft agar motility assay N.D. N.D. -0.4 -1.5 -1.4
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. +0.1 -1.3 -2.0
stress Nickel (II) chloride 0.5 mM N.D. N.D. -0.0 -1.1 -2.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. -1.2 -0.7 -1.3
stress Polymyxin B sulfate 0.0625 mg/ml N.D. N.D. +0.1 -1.5 -1.7
motility inner cut, LB soft agar motility assay N.D. N.D. +0.3 -1.9 -1.6
phage 36hr PHYTO11 MOI 1 N.D. N.D. +0.3 -0.6 -2.8
stress A22 0.005 mg/ml N.D. N.D. +0.3 -1.1 -1.9
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