Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34775 and BPHYT_RS34780 are separated by 277 nucleotidesBPHYT_RS34780 and BPHYT_RS34785 are separated by 4 nucleotidesBPHYT_RS34785 and BPHYT_RS34790 overlap by 4 nucleotidesBPHYT_RS34790 and BPHYT_RS34795 are separated by 3 nucleotides BPHYT_RS34775: BPHYT_RS34775 - diguanylate cyclase, at 3,405,749 to 3,406,687 _RS34775 BPHYT_RS34780: BPHYT_RS34780 - phytoene synthase, at 3,406,965 to 3,407,813 _RS34780 BPHYT_RS34785: BPHYT_RS34785 - hypothetical protein, at 3,407,818 to 3,409,086 _RS34785 BPHYT_RS34790: BPHYT_RS34790 - squalene--hopene cyclase, at 3,409,083 to 3,411,113 _RS34790 BPHYT_RS34795: BPHYT_RS34795 - hypothetical protein, at 3,411,117 to 3,411,848 _RS34795
Group Condition BPHYT_RS34775 BPHYT_RS34780 BPHYT_RS34785 BPHYT_RS34790 BPHYT_RS34795
pH LB, pH4 -0.3 -4.6 +0.1 N.D. N.D.
pH LB, pH4 -0.1 -4.5 +0.0 N.D. N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.5 -4.0 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -1.7 -2.6 +0.3 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.8 -3.1 +0.1 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.5 -2.9 -0.3 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.0 -2.6 +0.1 N.D. N.D.
phage 36hr PHYTO11 MOI 1 -0.6 -2.7 -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -0.7 -2.3 -0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -3.1 -0.2 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.3 -2.4 -0.5 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -3.0 +0.2 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -3.2 -0.0 N.D. N.D.
phage 24hr PHYTO7 MOI 1 -0.6 -2.8 +0.4 N.D. N.D.
phage 24hr PHYTO2 MOI 1 -0.7 -2.6 +0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.4 +0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -3.5 +0.6 N.D. N.D.
phage 36hr PHYTO2 MOI 1 -1.0 -2.3 +0.8 N.D. N.D.
phage 36hr PHYTO8 MOI 10 -0.7 -2.5 +0.7 N.D. N.D.
stress Lomefloxacin 0.001 mM -0.1 -2.7 +0.3 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 -3.0 +0.5 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.5 -3.6 +0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -2.5 +0.4 N.D. N.D.
phage 36hr PHYTO2 MOI 1 -0.4 -2.4 +0.6 N.D. N.D.
phage PHYTO3 MOI 0.1 -0.2 -2.5 +0.6 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 -3.1 +0.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -2.4 +0.8 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +1.1 -2.0 -0.1 N.D. N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +1.1 -1.6 +0.4 N.D. N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +2.2 -2.2 +0.2 N.D. N.D.
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