Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34610	BPHYT_RS34615	BPHYT_RS34620	BPHYT_RS34625	BPHYT_RS34630
phage	24hr PHYTO MOI 0.1	+0.1	N.D.	-0.5	-1.5	-0.0
phage	24hr PHYTO9 MOI 0.1	-0.2	N.D.	-0.3	-1.3	-0.1
phage	P. phyto PHYTO2 MOI 1	-0.5	N.D.	-0.8	-0.6	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	N.D.	-0.6	-0.7	-0.3
phage	PHYTO3 MOI 0.1	-0.2	N.D.	-0.6	-0.9	-0.1
carbon source	Sebacic (C)	-0.3	N.D.	-0.1	-1.3	-0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.4	N.D.	-1.0	-0.5	+0.1
phage	24hr PHYTO2 MOI 1	-0.6	N.D.	-0.3	-0.8	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	N.D.	-1.0	-0.2	-0.2
phage	36hr PHYTO4 MOI 1	-0.5	N.D.	-0.6	-0.5	+0.1
phage	24hr PHYTO6 MOI 10	-0.0	N.D.	+0.1	-1.4	+0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.7	N.D.	-0.3	-0.5	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	-0.5	-0.7	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-2.1	N.D.	+0.0	+0.7	+0.3
phage	36hr PHYTO8 MOI 10	+0.2	N.D.	+0.6	-1.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	N.D.	-0.7	-0.4	+0.3
carbon source	Malonic (C)	-0.2	N.D.	-0.2	-0.9	+0.4
carbon source	Protocatechuic Acid (C)	-0.2	N.D.	+0.6	-1.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	N.D.	-0.3	-0.7	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	N.D.	-0.3	-0.8	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.0	N.D.	+0.2	+0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	N.D.	+0.8	-1.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.3	N.D.	+0.5	-1.4	+0.4
carbon source	L-Fucose (C)	+0.2	N.D.	+0.6	-1.3	+0.2
phage	36hr PHYTO4 MOI 0.1	-0.2	N.D.	-0.6	+0.8	-0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	N.D.	+0.8	-0.6	+0.0
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	N.D.	-0.5	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	N.D.	-0.5	+0.9	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	N.D.	-0.7	+0.4	+0.5
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.7	N.D.	+0.6	+0.4	+0.3