Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34570	BPHYT_RS34575	BPHYT_RS34580	BPHYT_RS34585	BPHYT_RS34590
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.0	-0.3	-0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.5	-0.7	-0.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.3	-0.3	-0.2	-0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.9	+0.5	-0.4	-0.5	-0.4
phage	24hr PHYTO MOI 0.1	-0.4	+0.0	-0.6	-0.4	-0.1
phage	36hr PHYTO8 MOI 10	-0.3	-0.5	-0.0	-0.8	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.8	-0.5	-0.2	+0.8
phage	36hr PHYTO10 MOI 10	+0.2	-0.4	-0.5	-0.3	-0.2
phage	36hr PHYTO7 MOI 0.1	-0.5	+0.2	-0.6	-0.2	+0.1
phage	36hr PHYTO4 MOI 1	-0.3	+0.3	-0.5	-0.6	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.6	-0.3	+0.2	-0.6	+0.5
phage	PHYTO3 MOI 0.1	+0.1	-0.2	-0.3	-0.8	+0.3
phage	36hr PHYTO2 MOI 1	-0.0	+0.5	-0.4	-0.8	+0.1
phage	24hr PHYTO1 MOI 10	-0.3	+0.2	-0.4	-0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.5	+0.0	+1.0	-0.6
phage	24hr PHYTO9 MOI 10	-0.7	+0.8	-0.3	+0.0	-0.1
motility	outer cut, LB soft agar motility assay	-0.2	+0.6	+0.2	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.7	-0.3	+0.1	-0.4
carbon source	2-Deoxy-D-Ribose (C)	+0.7	-0.4	+0.2	-0.1	-0.3
carbon source	D-Glucose (C)	-0.6	+0.3	+0.1	+0.1	+0.7
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.1	+0.9	+0.7	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	-0.3	+0.9	-0.4	+0.5
carbon source	Xylitol (C)	+0.8	+0.6	-0.2	-0.1	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.1	+0.6	+0.8	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.6	-0.4	+0.5	+0.6	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.2	+0.8	+0.5	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.7	+0.6	-0.0	-0.0	+0.2
supernatant control	Vogels_fungal_media 0.1X	+0.7	+0.8	+0.2	-0.0	-0.1
carbon source	Tween 20 (C)	+0.3	+0.9	-0.0	+0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	-0.3	+0.6	+0.9	+0.3