Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34515	BPHYT_RS34520	BPHYT_RS34525	BPHYT_RS34530	BPHYT_RS34535
phage	24hr PHYTO6 MOI 10	-0.0	-0.5	-0.4	-0.3	-0.8
phage	36hr PHYTO1 MOI 10	-0.3	-0.3	-0.4	-0.4	-0.5
motility	inner cut, LB soft agar motility assay	-0.6	-0.3	+0.4	-1.1	-0.3
carbon source	Phenylacetic 5 mM (C)	-0.2	+0.3	-0.6	-0.9	-0.2
phage	24hr PHYTO3 MOI 10	+0.0	-0.1	-0.8	+0.2	-0.8
phage	24hr PHYTO3 MOI 10	+0.2	-0.2	-1.3	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	+0.2	-1.6	-0.2
nitrogen source	L-Isoleucine (N)	+0.1	-0.2	+0.5	-1.5	-0.2
phage	36hr PHYTO8 MOI 0.1	-0.6	-0.1	-0.5	+0.4	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.1	-0.4	+0.6	-1.6	+0.3
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.2	+0.4	-0.5	-0.5	-0.4
carbon source	Phenylacetic 5 mM (C)	-0.2	+0.4	+0.4	-1.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+0.2	+0.4	-1.7	-0.0
phage	24hr PHYTO1 MOI 10	+0.1	-0.4	-0.6	+0.9	-0.4
carbon source	Suberic (C)	+0.2	-0.5	-0.5	+0.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+0.6	+0.0	-1.0	-0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.4	-0.3	+1.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.1	-0.3	+1.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+1.0	+0.9	-1.1	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.6	+0.1	+0.5	-0.4	+0.4
phage	24hr PHYTO8 MOI 1	+0.1	+0.1	+0.5	+1.0	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	-0.1	-0.3	+1.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.3	-1.1	+1.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.0	-0.1	+1.9	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.2	+0.8	+0.1	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.3	+1.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.1	+0.5	-0.1	+1.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+0.2	-0.1	+1.6	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.0	-0.2	+2.7	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.1	-0.0	+2.5	+0.1