Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34505	BPHYT_RS34510	BPHYT_RS34515	BPHYT_RS34520	BPHYT_RS34525
phage	36hr PHYTO4 MOI 1	-0.5	-0.2	-0.2	-0.3	-0.5
carbon source	Suberic (C)	-0.7	-0.2	+0.2	-0.5	-0.5
phage	24hr PHYTO1 MOI 10	-0.1	-0.6	-0.1	-0.1	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-0.1	+0.1	+0.1	-0.6
nitrogen source	L-Lysine (N)	-1.7	-0.2	+0.4	-0.0	+0.1
carbon source	Tween 20 (C)	-1.1	+0.1	+0.2	-0.4	-0.1
phage	P. phyto PHYTO2 MOI 1	-1.1	-0.2	-0.1	-0.0	+0.3
phage	24hr PHYTO3 MOI 10	+0.4	-0.6	+0.0	-0.1	-0.8
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.5	-0.1	-0.3	+0.5	-0.6
motility	inner cut, LB soft agar motility assay	-0.5	+0.0	-0.6	-0.3	+0.4
phage	36hr PHYTO1 MOI 10	+0.4	-0.2	-0.3	-0.3	-0.4
phage	24hr PHYTO4 MOI 0.1	+0.2	-0.4	-0.3	+0.2	-0.6
phage	36hr PHYTO8 MOI 0.1	+0.8	-0.4	-0.6	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.2	+0.3	+0.3	-1.1
phage	24hr PHYTO3 MOI 10	+0.7	+0.1	+0.2	-0.2	-1.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.2	+0.5	+0.1	-0.2	-0.9
phage	24hr PHYTO6 MOI 10	+0.4	+0.3	-0.0	-0.5	-0.4
phage	24hr PHYTO9 MOI 10	+0.8	-0.4	+0.0	-0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	+0.0	+0.2	+0.6	-0.0
carbon source	Phenylacetic 5 mM (C)	+0.7	-0.2	-0.2	+0.3	-0.6
carbon source	pyruvate (C)	+0.6	+0.3	+0.0	-0.5	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.7	-0.1	+0.1	+0.3	-0.5
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.7	+0.2	+0.1	-0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	+0.0	+0.3	-0.4	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.5	+0.2	-0.2	+0.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.3	+0.7	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.4	+0.6	+1.0	+0.9
nitrogen source	L-Serine (N)	+0.8	+0.2	+0.1	+0.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.7	+0.5	+0.4	+0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+1.2	+0.6	+0.1	+0.6	-0.3