Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34430	BPHYT_RS34435	BPHYT_RS34440	BPHYT_RS34445	BPHYT_RS34450
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-1.9	-0.1	+0.1	-0.7	-0.4
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-0.7	+0.2	-0.8	-1.8	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-3.1	+0.0	+0.0	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.6	+0.0	-0.2	-0.9	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.4	-0.2	-0.7	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.2	+0.3	-0.3	-1.3	-0.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	+0.1	-0.1	-1.9	+0.6
carbon source	Phenylacetic 5 mM (C)	+0.4	+0.3	-0.2	-1.1	-0.9
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	+0.8	-0.3	+0.1	-1.7	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-1.2	+0.1	-0.1	+0.8	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	+0.1	-0.1	-1.9	+0.2
carbon source	Phenylacetic 5 mM (C)	+1.1	-0.2	-0.1	-1.1	-0.2
carbon source	Sebacic (C)	+0.9	+0.0	+0.3	-1.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.0	+0.5	-0.2	-1.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.2	+0.5	-0.6	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.3	+0.6	-0.9	-0.0	+0.8
nophagecontrol	24hr Phyto Lib Only	+1.0	+0.4	+0.2	+0.5	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.0	+0.1	+0.0	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.7	+0.1	+0.1	-0.7	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.4	+0.0	+0.2	+0.7	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	-0.1	+0.3	-0.7	+0.4
phage	36hr PHYTO4 MOI 1	+0.7	+0.4	+0.3	+0.8	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.5	+0.1	-0.0	-0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.9	+0.1	-0.0	-1.2	-0.0
phage	36hr PHYTO1 MOI 10	+0.9	+0.3	+0.5	+0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.8	-0.2	+0.2	-1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.2	-0.1	+0.2	-0.5	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.7	+0.3	+0.1	-0.4	+0.3
phage	24hr PHYTO4 MOI 10	+0.5	+0.2	+0.0	+1.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.9	+0.3	+0.2	-0.4	+0.0