Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34370 and BPHYT_RS34375 are separated by 338 nucleotidesBPHYT_RS34375 and BPHYT_RS34380 are separated by 90 nucleotidesBPHYT_RS34380 and BPHYT_RS34385 are separated by 138 nucleotidesBPHYT_RS34385 and BPHYT_RS34395 are separated by 1365 nucleotides BPHYT_RS34370: BPHYT_RS34370 - ATPase, at 3,318,852 to 3,319,103 _RS34370 BPHYT_RS34375: BPHYT_RS34375 - membrane protein, at 3,319,442 to 3,320,434 _RS34375 BPHYT_RS34380: BPHYT_RS34380 - thioredoxin reductase, at 3,320,525 to 3,322,270 _RS34380 BPHYT_RS34385: BPHYT_RS34385 - hypothetical protein, at 3,322,409 to 3,322,684 _RS34385 BPHYT_RS34395: BPHYT_RS34395 - multidrug transporter MatE, at 3,324,050 to 3,324,649 _RS34395
Group Condition BPHYT_RS34370 BPHYT_RS34375 BPHYT_RS34380 BPHYT_RS34385 BPHYT_RS34395
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -0.3 -0.3 +0.0 -0.4
carbon source Suberic (C) -0.3 -0.3 -0.5 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.2 -0.7 -0.2 +0.2
phage 24hr PHYTO3 MOI 10 +0.3 -0.0 +0.0 -0.1 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -0.3 -0.0 +0.4 -0.4
nitrogen source L-Isoleucine (N) -1.0 +0.2 +0.3 -0.2 +0.0
phage 36hr PHYTO7 MOI 1 +0.3 +0.2 -0.3 -0.4 -0.4
phage 36hr PHYTO10 MOI 10 +0.2 +0.2 -0.5 -0.2 -0.4
nophagecontrol 24hr Phyto Lib Only +0.6 -0.1 -0.4 -0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.7 -0.5 -0.4 -0.0 -0.2
phage P. phyto PHYTO2 MOI 0.1 +0.4 +0.3 -0.6 -0.1 -0.2
phage 36hr PHYTO4 MOI 0.1 +0.3 +0.2 +0.3 -0.2 -0.8
carbon source Suberic (C) +0.6 +0.1 +0.2 -0.1 -0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +0.3 +0.0 -0.2 -0.6
carbon source Tween 20 (C) +0.3 +0.2 +0.4 -0.5 -0.2
phage 24hr PHYTO7 MOI 10 +0.2 +0.1 +0.6 -0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 +0.1 -0.3 +0.0 -0.3
phage 24hr PHYTO3 MOI 10 -0.3 +0.2 +0.4 -0.3 +0.5
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 +0.7 -0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +1.0 +0.4 -0.0 -0.0 -0.7
nophagecontrol 36hr Phyto Lib Only +0.4 +0.5 +0.1 +0.2 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.5 +0.2 +0.6 +0.3 -0.8
phage P. phyto PHYTO2 MOI 1 +0.4 +0.4 +0.6 -0.3 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +1.0 +0.2 +0.0 -0.1 -0.3
carbon source D-Glucose (C) +0.6 +0.1 +0.3 +0.2 -0.4
stress A22 0.005 mg/ml +1.0 -0.2 -0.1 +0.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +1.1 +0.1 -0.1 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 -0.1 +0.4 +0.1 -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.7 -0.1 +0.9 -0.3 +0.4
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 +0.1 +0.6 -0.1 +0.7
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BPHYT_RS34370
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BPHYT_RS34375
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