Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34350	BPHYT_RS34355	BPHYT_RS34360	BPHYT_RS34365	BPHYT_RS34370
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.0	-0.5	-0.7	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	-1.3	-0.5	-0.1	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.6	-0.8	-0.4	-0.1	+0.3
motility	inner cut, LB soft agar motility assay	+0.2	-0.2	-1.9	+0.1	+0.4
motility	inner cut, LB soft agar motility assay	+0.3	-0.0	-1.6	+0.0	-0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	-0.9	-0.5	-0.4	+0.2
nitrogen source	L-Isoleucine (N)	-0.2	-0.1	+0.2	-0.1	-1.0
motility	outer cut, LB soft agar motility assay	+0.1	+0.1	-2.0	+0.1	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	+0.5	-0.9	-0.1	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	+0.4	+0.1	-0.2	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.0	-0.8	-0.5	+0.0	+0.5
motility	outer cut, LB soft agar motility assay	+0.2	-0.2	-1.2	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	-1.1	-0.4	+0.8
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.8	-0.4	+0.2	+0.3
nitrogen source	L-Glutamine (N)	-0.2	+0.0	-0.6	+0.6	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.9	-0.2	+0.3	+0.5
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	-0.4	-0.6	-0.1	+0.5
nophagecontrol	24hr Phyto Lib Only	-0.3	+0.1	-0.3	-0.4	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	-0.8	+0.1	+0.4	+0.5
motility	outer cut, LB soft agar motility assay	+0.4	+0.1	-1.2	+0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.0	+0.4	-0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.0	-0.2	-0.7	+0.4	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.3	-0.3	-0.5	+0.2	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.3	+0.7	-0.2	+0.8
stress	A22 0.005 mg/ml	+0.5	+0.0	+0.3	-0.2	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	+0.0	+0.2	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	-0.1	+0.5	+0.0	+0.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.3	-0.2	+0.8	+0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.1	+1.5	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.2	+1.3	+0.4	+1.1