Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34240	BPHYT_RS34245	BPHYT_RS34250	BPHYT_RS34255	BPHYT_RS34260
carbon source	L-Fucose (C)	-4.2	-4.2	-6.0	+0.1	+0.3
carbon source	Xylitol (C)	-2.3	-2.6	-2.3	+0.3	-0.1
carbon source	L-Rhamnose (C)	-1.5	-2.5	-2.9	-0.0	+0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.1	-0.7	-1.3	-0.8	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-1.5	-0.8	+0.1	-0.1	-0.6
phage	36hr PHYTO10 MOI 10	-0.9	-0.9	-0.3	+0.2	-0.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.9	-0.1	+0.1	-0.2	-1.2
phage	24hr PHYTO6 MOI 1	-0.5	-0.5	-0.0	+0.1	-1.4
phage	24hr PHYTO3 MOI 10	-0.8	-0.3	+0.1	+0.2	-1.1
phage	36hr PHYTO3 MOI 1	-0.8	-0.4	+0.1	+0.6	-0.9
phage	36hr PHYTO1 MOI 1	+0.2	-0.3	+0.2	+0.3	-1.9
phage	36hr PHYTO8 MOI 10	-0.3	+0.2	+0.1	+0.4	-1.7
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.3	+0.6	+0.9	-0.2	-1.2
phage	24hr PHYTO7 MOI 10	+0.9	+0.3	-0.5	+0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+1.0	+0.3	+0.4	-0.3
carbon source	2-Deoxy-D-Ribose (C)	+0.7	+0.3	+1.2	-0.0	-0.7
carbon source	2-Deoxy-D-Ribose (C)	+1.1	+0.5	+1.1	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+1.3	+0.5	+0.4	-0.0
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.5	+1.0	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.3	+0.9	-0.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	+0.4	+1.1	-0.2	-0.5
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	+0.3	+1.2	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	+1.0	-0.1	-0.3	+0.9
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.8	+0.6	+0.8	-0.1	+0.2
carbon source	2-Deoxy-D-Ribose (C)	+0.9	+1.1	+1.4	+0.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.5	+0.9	+0.2	+0.5
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.5	+0.7	+1.5	-0.3	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	+0.6	+1.7	-0.2	+0.1
carbon source	2-Deoxy-D-Ribose (C)	+1.7	+0.9	+1.2	+0.2	-0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.2	+3.1	+4.9	+0.6	+0.8