Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34220	BPHYT_RS34225	BPHYT_RS34230	BPHYT_RS34235	BPHYT_RS34240
carbon source	L-Fucose (C)	-5.8	-5.1	-4.7	-3.0	-4.2
carbon source	L-Rhamnose (C)	-1.3	-4.6	-2.3	-1.4	-1.5
phage	36hr PHYTO8 MOI 10	-0.2	+0.2	+0.1	-1.8	-1.0
carbon source	Xylitol (C)	-0.2	+0.3	+0.4	-0.9	-2.3
nitrogen source	L-Serine (N)	+0.0	-0.0	-0.0	-1.2	-1.3
phage	24hr PHYTO7 MOI 1	-0.1	-0.1	+0.1	-2.3	-0.0
phage	36hr PHYTO4 MOI 1	+0.2	+0.1	+0.4	-2.1	-0.5
phage	24hr PHYTO3 MOI 0.1	-0.1	-0.6	+0.6	-0.8	-0.6
carbon source	Protocatechuic Acid (C)	+0.8	-0.3	+0.4	-1.8	-0.6
phage	24hr PHYTO3 MOI 10	-0.6	-0.1	+0.7	-0.6	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.3	+0.4	-1.0	-0.3
phage	24hr PHYTO2 MOI 0.1	-0.7	-0.0	+0.7	-1.2	+0.0
phage	36hr PHYTO10 MOI 1	-0.5	+0.2	+0.7	-0.9	-0.5
phage	24hr PHYTO10 MOI 10	-0.1	-0.7	+0.6	-1.0	+0.2
carbon source	Malonic (C)	+0.6	+0.1	+0.2	-1.4	-0.3
carbon source	2-Deoxy-D-Ribose (C)	-0.2	+0.3	-0.7	-1.1	+1.1
nophagecontrol	36hr Phyto Lib only	+0.4	-0.2	+0.5	-1.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.1	+0.7	+0.7	-0.8
phage	36hr PHYTO1 MOI 1	+0.8	-0.2	+0.6	-1.1	+0.0
phage	36hr PHYTO1 MOI 10	-0.5	-0.3	+0.5	+0.8	+0.8
motility	inner cut, LB soft agar motility assay	+0.4	+0.5	+0.7	-0.9	+1.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.2	+1.1	-0.3	+1.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+1.4	+0.6	+0.3	-0.2	+0.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+1.2	+0.9	-0.1	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.7	+0.4	+1.4	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	+1.4	+1.0	+0.6	-0.1	+0.5
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.8	+0.5	+0.6	+0.9
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.7	+0.6	+0.6	+1.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+2.1	+1.1	+1.4	+0.6	+0.8
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.7	+3.6	+1.1	+0.3	+1.2