Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34195 and BPHYT_RS34200 are separated by 120 nucleotidesBPHYT_RS34200 and BPHYT_RS34205 are separated by 58 nucleotidesBPHYT_RS34205 and BPHYT_RS34210 are separated by 105 nucleotidesBPHYT_RS34210 and BPHYT_RS34215 are separated by 66 nucleotides BPHYT_RS34195: BPHYT_RS34195 - thioesterase, at 3,275,488 to 3,275,922 _RS34195 BPHYT_RS34200: BPHYT_RS34200 - ArsR family transcriptional regulator, at 3,276,043 to 3,276,345 _RS34200 BPHYT_RS34205: BPHYT_RS34205 - pyridoxal-dependent decarboxylase, at 3,276,404 to 3,277,759 _RS34205 BPHYT_RS34210: BPHYT_RS34210 - 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data), at 3,277,865 to 3,278,713 _RS34210 BPHYT_RS34215: BPHYT_RS34215 - 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data), at 3,278,780 to 3,279,523 _RS34215
Group Condition BPHYT_RS34195 BPHYT_RS34200 BPHYT_RS34205 BPHYT_RS34210 BPHYT_RS34215
carbon source L-Fucose (C) -0.1 -0.3 +0.5 -4.6 -5.1
carbon source L-Rhamnose (C) -0.1 -0.1 -0.0 -5.6 -1.9
supernatant control Vogels_fungal_media 0.1X -0.8 -0.5 -0.2 -0.0 -0.5
phage 24hr PHYTO10 MOI 10 -0.2 -0.7 -0.5 +0.1 -0.3
phage 36hr PHYTO4 MOI 1 -0.6 -0.6 -0.5 +0.1 +0.1
phage 36hr PHYTO8 MOI 0.1 -0.4 -0.4 -0.9 +0.5 -0.1
phage 24hr PHYTO9 MOI 10 +0.1 -0.2 -0.8 +0.3 -0.3
nitrogen source L-Lysine (N) -0.3 -0.3 +0.5 -0.2 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.1 -0.5 +0.6 -0.5
phage 24hr PHYTO3 MOI 0.1 -0.2 -0.7 -0.1 +0.5 -0.3
phage 24hr PHYTO6 MOI 0.1 -0.4 -0.3 -0.0 +0.5 -0.4
phage 36hr PHYTO6 MOI 10 -0.5 -0.2 +0.2 +0.4 -0.3
phage 36hr PHYTO1 MOI 10 -0.3 -0.4 -0.3 +0.7 -0.1
phage 36hr PHYTO2 MOI 1 -0.1 -0.8 +0.6 +0.3 -0.2
motility outer cut, LB soft agar motility assay -0.5 -0.4 +0.1 +0.3 +0.5
phage 24hr PHYTO3 MOI 1 -0.2 -0.5 +0.4 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.3 -0.7 +0.3 +0.5
phage P. phyto PHYTO2 MOI 0.1 -0.3 -0.1 +0.7 +0.7 -0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 -0.4 +0.7 +0.0 +0.5
motility inner cut, LB soft agar motility assay +0.1 -0.5 +0.6 +0.3 +0.3
phage P. phyto PHYTO2 MOI 1 +0.2 +0.1 +0.6 +0.6 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 -0.5 +0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 +0.1 -0.5 +0.9 +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 -0.1 -0.5 +1.5 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.1 -0.3 +1.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.2 +0.7 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.5 +0.7 +0.8 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.1 -0.1 +0.5 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.4 +0.4 -0.2 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.2 +0.2 +0.8 +0.7
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