Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS34175 and BPHYT_RS34180 are separated by 63 nucleotidesBPHYT_RS34180 and BPHYT_RS34185 are separated by 596 nucleotidesBPHYT_RS34185 and BPHYT_RS34190 are separated by 112 nucleotidesBPHYT_RS34190 and BPHYT_RS34195 are separated by 269 nucleotides BPHYT_RS34175: BPHYT_RS34175 - N-acylglucosamine 2-epimerase, at 3,271,187 to 3,272,296 _RS34175 BPHYT_RS34180: BPHYT_RS34180 - restriction endonuclease, at 3,272,360 to 3,272,683 _RS34180 BPHYT_RS34185: BPHYT_RS34185 - cold-shock protein, at 3,273,280 to 3,273,483 _RS34185 BPHYT_RS34190: BPHYT_RS34190 - chemotaxis protein, at 3,273,596 to 3,275,218 _RS34190 BPHYT_RS34195: BPHYT_RS34195 - thioesterase, at 3,275,488 to 3,275,922 _RS34195
Group Condition BPHYT_RS34175 BPHYT_RS34180 BPHYT_RS34185 BPHYT_RS34190 BPHYT_RS34195
motility outer cut, LB soft agar motility assay -0.4 N.D. +1.1 +0.6 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. +1.8 +0.3 -0.2
phage 36hr PHYTO11 MOI 1 +0.5 N.D. +1.4 -0.1 -0.3
phage 36hr PHYTO6 MOI 1 +0.6 N.D. +1.1 +0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 N.D. +1.8 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 N.D. +1.7 +0.6 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. +1.4 +0.4 +0.2
phage 36hr PHYTO6 MOI 10 +0.5 N.D. +1.3 +0.3 -0.5
phage 24hr PHYTO3 MOI 10 +0.6 N.D. +1.2 +0.2 -0.5
phage 36hr PHYTO6 MOI 0.1 +0.4 N.D. +1.3 +0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. +1.4 +0.4 +0.2
phage 24hr PHYTO6 MOI 1 +0.3 N.D. +1.2 +0.6 -0.4
phage 36hr PHYTO10 MOI 10 +0.7 N.D. +0.8 +0.6 -0.4
phage 36hr PHYTO4 MOI 1 +0.5 N.D. +1.3 +0.5 -0.6
phage 24hr PHYTO4 MOI 0.1 +0.6 N.D. +1.3 +0.3 -0.3
phage 36hr PHYTO4 MOI 0.1 +0.5 N.D. +1.4 +0.5 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. +1.9 +0.4 +0.2
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +1.1 +0.9 -0.1
phage 36hr PHYTO4 MOI 1 +0.4 N.D. +1.1 +0.6 -0.2
phage P. phyto corn MOI 1 +0.9 N.D. +0.9 +0.3 -0.1
phage 36hr PHYTO7 MOI 1 +0.4 N.D. +1.7 +0.3 -0.3
phage 24hr PHYTO2 MOI 1 +0.2 N.D. +1.6 +0.4 -0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +1.3 +0.8 +0.1
phage 24hr PHYTO7 MOI 1 +0.5 N.D. +1.2 +0.5 +0.1
phage 24hr PHYTO8 MOI 1 +0.7 N.D. +1.1 +0.3 +0.2
phage 36hr PHYTO1 MOI 1 +0.6 N.D. +1.7 +0.2 -0.2
phage 36hr PHYTO3 MOI 1 +0.4 N.D. +1.9 +0.6 -0.3
phage 36hr PHYTO2 MOI 1 +0.4 N.D. +1.7 +0.7 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. +1.8 +0.9 +0.1
phage 36hr PHYTO8 MOI 10 +0.8 N.D. +1.9 +0.4 -0.0
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