Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34090	BPHYT_RS34095	BPHYT_RS34100	BPHYT_RS34105	BPHYT_RS34110
nitrogen source	L-Serine (N)	+0.1	-0.2	-2.3	-0.5	+0.2
phage	24hr PHYTO2 MOI 1	+0.0	-0.5	-0.9	+0.0	-0.5
phage	P. phyto corn MOI 1	+0.0	-0.4	-1.1	-0.1	-0.0
phage	24hr PHYTO2 MOI 0.1	+0.1	-0.6	-0.7	+0.2	-0.3
phage	36hr PHYTO10 MOI 10	-0.2	-0.5	-0.7	+0.4	-0.2
nophagecontrol	24hr Phyto Lib Only	+0.2	-0.4	-0.8	+0.2	-0.3
phage	36hr PHYTO2 MOI 1	-0.2	-0.1	-0.6	+0.6	-0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.6	-0.2	-1.1	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.4	-0.7	+0.5	-0.2
phage	36hr PHYTO11 MOI 1	-0.1	+0.2	-0.9	+0.4	-0.2
carbon source	succinate (C)	-0.4	-0.3	+0.2	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.3	-1.0	-0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	+0.4	-0.5	-0.5	-0.2
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.2	-0.8	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	-0.6	+0.6	-0.2
phage	24hr PHYTO1 MOI 10	-0.1	-0.4	+0.3	+0.6	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.0	-0.5	+0.9	-0.0	-0.2
phage	24hr PHYTO MOI 0.1	-0.2	-0.4	+0.7	+0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.7	+1.1	+0.3	+0.0
phage	36hr PHYTO3 MOI 1	-0.2	-0.0	+0.9	+0.4	-0.3
phage	36hr PHYTO2 MOI 1	-0.0	-0.1	+0.6	+0.7	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.2	+1.2	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.3	-0.1	+1.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+1.1	+0.4	+0.4	-0.6
supernatant control	Vogels_fungal_media 0.1X	+0.5	+0.3	+0.9	-0.1	-0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.2	+0.2	+0.8	+0.6	-0.0
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	+0.0	+1.2	+0.4	-0.3
supernatant control	Vogels_fungal_media 0.1X	+0.1	+0.2	+1.6	+0.3	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.4	+0.8	+1.2	+0.2	+0.1
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+1.4	+1.1	+1.4	+0.9	+0.1