Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS34035	BPHYT_RS34040	BPHYT_RS34045	BPHYT_RS34050	BPHYT_RS34055
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-2.3	+0.2	N.D.	-0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-2.1	-0.3	N.D.	+0.2	N.D.
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-2.9	+0.2	N.D.	+0.6	N.D.
nitrogen source	L-Lysine (N)	+0.5	-0.5	N.D.	-1.6	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-2.1	+0.1	N.D.	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	+0.2	N.D.	-0.6	N.D.
vitamin	No vitamins t1	-1.3	+0.3	N.D.	-0.4	N.D.
carbon source	Malonic (C)	-0.6	+0.5	N.D.	-0.9	N.D.
phage	24hr PHYTO3 MOI 10	-0.8	+0.4	N.D.	-0.6	N.D.
phage	P. phyto corn MOI 0.1	-1.5	+0.2	N.D.	+0.4	N.D.
nophagecontrol	24hr Phyto Lib only	-1.5	+0.2	N.D.	+0.4	N.D.
carbon source	Dodecandioic (C)	-1.9	+0.9	N.D.	+0.4	N.D.
carbon source	2-Deoxy-D-Ribose (C)	-0.9	-0.1	N.D.	+0.8	N.D.
phage	24hr PHYTO7 MOI 1	-0.9	+0.4	N.D.	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+1.2	-0.7	N.D.	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.4	N.D.	+0.7	N.D.
nophagecontrol	36hr Phyto Lib Only	+0.8	+0.4	N.D.	-0.8	N.D.
phage	P. phyto PHYTO2 MOI 1	+0.4	+0.9	N.D.	-0.6	N.D.
phage	36hr PHYTO10 MOI 1	+1.4	+0.3	N.D.	-0.8	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.7	+0.9	N.D.	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	+0.7	N.D.	-0.3	N.D.
phage	36hr PHYTO6 MOI 0.1	+1.2	+0.6	N.D.	-0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+2.0	N.D.	+0.0	N.D.
phage	P. phyto PHYTO2 MOI 1	+0.9	-0.2	N.D.	+0.9	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.9	-0.3	N.D.	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.4	N.D.	+0.6	N.D.
phage	36hr PHYTO4 MOI 1	+1.2	+0.2	N.D.	+0.5	N.D.
phage	36hr PHYTO6 MOI 10	+1.4	+0.9	N.D.	-0.3	N.D.
motility	outer cut, LB soft agar motility assay	+1.1	+0.9	N.D.	+0.2	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+2.7	-0.3	N.D.	+0.0	N.D.