Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS33935 and BPHYT_RS33940 are separated by 4 nucleotidesBPHYT_RS33940 and BPHYT_RS33945 are separated by 3 nucleotidesBPHYT_RS33945 and BPHYT_RS33950 are separated by 157 nucleotidesBPHYT_RS33950 and BPHYT_RS33955 are separated by 492 nucleotides BPHYT_RS33935: BPHYT_RS33935 - succinate dehydrogenase flavoprotein subunit, at 3,204,789 to 3,206,564 _RS33935 BPHYT_RS33940: BPHYT_RS33940 - succinate dehydrogenase, at 3,206,569 to 3,206,937 _RS33940 BPHYT_RS33945: BPHYT_RS33945 - succinate dehydrogenase, at 3,206,941 to 3,207,357 _RS33945 BPHYT_RS33950: BPHYT_RS33950 - GntR family transcriptional regulator, at 3,207,515 to 3,208,315 _RS33950 BPHYT_RS33955: BPHYT_RS33955 - malate dehydrogenase, at 3,208,808 to 3,209,791 _RS33955
Group Condition BPHYT_RS33935 BPHYT_RS33940 BPHYT_RS33945 BPHYT_RS33950 BPHYT_RS33955
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. N.D. -1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -1.4 N.D.
stress Paraquat dichloride 0.032 mg/ml N.D. N.D. N.D. -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -1.3 N.D.
carbon source Xylitol (C) N.D. N.D. N.D. -1.3 N.D.
carbon source D-Xylose (C) N.D. N.D. N.D. -1.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. N.D. -1.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. N.D. -1.2 N.D.
stress Paraquat dichloride 0.064 mg/ml N.D. N.D. N.D. -1.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. N.D. -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days N.D. N.D. N.D. -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -1.1 N.D.
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. -1.1 N.D.
motility outer cut, LB soft agar motility assay N.D. N.D. N.D. -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. N.D. -1.1 N.D.
carbon source NAG (C) N.D. N.D. N.D. -1.1 N.D.
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.0 N.D.
carbon source L-Tryptophan (C) N.D. N.D. N.D. -1.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -1.0 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. N.D. -0.9 N.D.
carbon source Tween 20 (C) N.D. N.D. N.D. -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.9 N.D.
carbon source Disodium Glutarate (C) N.D. N.D. N.D. +1.0 N.D.
remove
BPHYT_RS33935
plot		 remove
BPHYT_RS33940
plot		 remove
BPHYT_RS33945		 remove
BPHYT_RS33950
plot		 remove
BPHYT_RS33955
plot