Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33790	BPHYT_RS33795	BPHYT_RS33800	BPHYT_RS33805	BPHYT_RS33810
nitrogen source	L-Lysine (N)	-0.3	+0.2	-0.3	-4.5	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.7	+0.2	-4.3	-0.3
phage	P. phyto PHYTO2 MOI 1	-0.2	-0.5	-0.0	-4.0	-0.3
phage	36hr PHYTO8 MOI 0.1	-0.4	-0.4	-0.1	-3.4	-0.4
phage	36hr PHYTO1 MOI 1	-0.0	-0.3	-0.0	-3.5	-0.5
phage	36hr PHYTO2 MOI 0.1	-0.1	-0.9	+0.2	-3.6	+0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.3	-0.1	+0.1	-3.9	-0.7
phage	24hr PHYTO1 MOI 10	+0.1	+0.1	-0.2	-3.7	-0.5
phage	36hr PHYTO1 MOI 1	-0.2	-0.1	+0.1	-3.4	-0.3
phage	24hr PHYTO11 MOI 0.1	-0.3	+0.1	+0.1	-3.4	-0.1
nitrogen source	L-Serine (N)	+0.3	+0.1	-0.2	-3.1	-0.7
phage	36hr PHYTO2 MOI 1	-0.0	-0.6	+0.2	-3.4	+0.8
phage	36hr PHYTO7 MOI 1	-0.2	+0.0	+0.4	-3.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.3	+0.0	-2.0	-0.5
carbon source	Suberic (C)	+0.1	+0.4	+0.1	-3.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.3	-0.2	-1.6	-0.7
nitrogen source	L-Isoleucine (N)	-0.1	-0.5	-0.2	-1.9	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.2	-0.0	+0.3	-2.8	+0.4
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.1	-0.2	-2.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.3	-0.0	+0.9	-2.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.2	+0.1	-2.3	-0.0
phage	24hr PHYTO3 MOI 10	-0.5	+0.2	-0.1	-1.7	+0.3
phage	36hr PHYTO6 MOI 0.1	-0.1	-0.3	+0.0	-2.0	+0.7
phage	24hr PHYTO9 MOI 10	+0.0	-0.2	-0.1	-2.0	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	+0.1	-0.1	-1.6	+0.6
phage	24hr PHYTO7 MOI 10	-0.0	-0.3	-0.1	-1.7	+0.7
carbon source	D-Glucose (C)	+0.1	+0.6	+0.2	-2.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.4	+0.5	+1.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.6	+0.4	-0.9	-0.3
motility	outer cut, LB soft agar motility assay	+0.4	+0.6	-0.1	+1.6	+0.9