Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33780	BPHYT_RS33785	BPHYT_RS33790	BPHYT_RS33795	BPHYT_RS33800
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.2	-1.2	-0.5	+0.1	-0.1
carbon source	Phenylacetic 5 mM (C)	+0.2	-0.7	-0.2	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.5	+0.1	-0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.3	-0.4	-0.7	+0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.8	+0.1	+0.0	-0.2	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.8	+0.0	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-1.1	-0.3	-0.0	+0.1
phage	P. phyto corn MOI 1	-0.3	-0.5	-0.5	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.8	+0.0	-0.4	+0.5
phage	24hr PHYTO6 MOI 0.1	-0.3	-0.5	+0.5	-0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.1	-0.3	-0.3	+0.4
phage	24hr PHYTO6 MOI 10	+0.2	-0.4	+0.2	-0.6	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.2	+0.2	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.6	+0.3	-0.1	-0.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.7	+0.6	-0.2	+0.1	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.3	+0.3	-0.0	+0.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.4	+0.4	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.5	+0.2	-0.3	+0.3
carbon source	D-Xylose (C)	+0.4	+0.5	+0.3	+0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	+0.4	+0.1	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.4	+0.4	+0.4	+0.4
motility	outer cut, LB soft agar motility assay	+0.2	+0.7	+0.1	+0.4	+0.2
carbon source	succinate (C)	+0.7	+0.8	+0.1	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.3	+0.5	+0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.4	+0.5	+0.3	+0.3
motility	inner cut, LB soft agar motility assay	+0.2	+0.3	+0.2	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.3	+0.7	+0.6	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.5	+0.3	+0.8	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.3	+0.4	+0.9	+0.6
motility	outer cut, LB soft agar motility assay	+0.3	+1.1	+0.5	+0.6	+0.2