Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33590	BPHYT_RS33595	BPHYT_RS33600	BPHYT_RS33605	BPHYT_RS33610
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.6	-0.2	+0.1	-0.0	-3.4
carbon source	L-Fucose (C)	-0.3	+0.2	-0.3	+0.0	-3.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.6	-0.0	+0.0	+0.1	-3.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-0.3	+0.0	-0.2	-3.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	-0.5	-0.3	-0.1	-2.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.1	+0.0	-0.2	+0.4	-3.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.3	+0.0	+0.7	-3.0
phage	24hr PHYTO2 MOI 1	-0.7	-0.2	+0.7	-0.4	-2.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.0	-0.3	+0.1	-2.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.7	+0.1	+0.0	+0.0	-3.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.0	+0.7	-0.4	-2.6
phage	24hr PHYTO6 MOI 0.1	-0.3	-0.3	+0.2	-0.5	-1.5
nitrogen source	L-Glutamic (N)	+0.1	-0.3	+0.1	+0.2	-2.4
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.9	-0.3	+0.6	+0.5	-2.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.2	-0.0	+0.1	-2.7
phage	36hr PHYTO11 MOI 1	+0.1	-0.0	+0.4	-0.5	-2.0
phage	36hr PHYTO6 MOI 10	+0.2	-0.4	+0.4	+0.0	-1.8
phage	24hr PHYTO8 MOI 1	-0.5	-0.3	+0.7	-0.4	-1.0
phage	24hr PHYTO3 MOI 10	-0.6	-0.5	+0.6	+0.1	-1.0
phage	24hr PHYTO3 MOI 10	-0.7	-0.1	+0.9	-0.3	-1.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.6	-0.2	+0.3	-0.1	-2.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.1	+0.6	-0.4	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	+0.2	+0.6	-0.0	-2.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	+0.2	+0.5	-0.1	-2.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.5	-0.2	+0.5	-0.9	-0.7
phage	24hr PHYTO4 MOI 10	+0.1	-0.3	+1.0	-0.6	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.3	+0.3	+0.4	-2.0
phage	36hr PHYTO8 MOI 10	-0.3	-0.2	+0.6	-0.7	+1.2
carbon source	Malonic (C)	-0.3	-0.4	+0.4	+0.6	+1.9
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.5	+0.4	+0.5	-0.1	+2.1