Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS33465 and BPHYT_RS33470 are separated by 154 nucleotidesBPHYT_RS33470 and BPHYT_RS33475 are separated by 465 nucleotidesBPHYT_RS33475 and BPHYT_RS33480 are separated by 307 nucleotidesBPHYT_RS33480 and BPHYT_RS33485 are separated by 289 nucleotides BPHYT_RS33465: BPHYT_RS33465 - D-alanyl-D-alanine carboxypeptidase, at 3,094,381 to 3,095,613 _RS33465 BPHYT_RS33470: BPHYT_RS33470 - DNA-binding protein, at 3,095,768 to 3,096,031 _RS33470 BPHYT_RS33475: BPHYT_RS33475 - threonine transporter, at 3,096,497 to 3,097,132 _RS33475 BPHYT_RS33480: BPHYT_RS33480 - cold-shock protein, at 3,097,440 to 3,097,643 _RS33480 BPHYT_RS33485: BPHYT_RS33485 - hypothetical protein, at 3,097,933 to 3,098,157 _RS33485
Group Condition BPHYT_RS33465 BPHYT_RS33470 BPHYT_RS33475 BPHYT_RS33480 BPHYT_RS33485
nitrogen source L-Citrulline (N) -0.4 -0.5 -0.1 N.D. -0.9
supernatant control Vogels_fungal_media; pH 5.5 -0.7 -0.2 -0.4 N.D. -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.3 -0.2 N.D. -0.5
phage 36hr PHYTO3 MOI 1 -1.3 -0.2 +0.2 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.2 +0.0 N.D. -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.9 -0.0 -0.0 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 +0.1 -0.2 N.D. -0.7
phage 36hr PHYTO6 MOI 10 -1.1 -0.6 -0.0 N.D. +0.5
phage P. phyto PHYTO2 MOI 1 -0.5 +0.2 -0.3 N.D. -0.5
phage 36hr PHYTO6 MOI 0.1 -0.9 -0.4 +0.1 N.D. +0.4
phage 36hr PHYTO10 MOI 10 -1.0 -0.3 +0.0 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 +0.1 +0.4 N.D. +0.4
phage 24hr PHYTO4 MOI 0.1 -1.0 -0.1 +0.2 N.D. +0.1
phage 36hr PHYTO4 MOI 1 -0.6 -0.6 +0.2 N.D. +0.6
phage 24hr PHYTO MOI 0.1 -0.7 -0.3 +0.1 N.D. +0.5
phage 36hr PHYTO8 MOI 0.1 -0.3 -0.6 +0.1 N.D. +0.5
phage 36hr PHYTO6 MOI 1 -0.4 -0.6 +0.2 N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.9 +0.4 N.D. +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -0.9 +0.2 N.D. +0.2
phage 36hr PHYTO4 MOI 1 -0.7 -0.3 +0.0 N.D. +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.0 -0.2 N.D. +0.8
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.8 -0.6 +0.0 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 +0.4 -0.2 N.D. +0.8
carbon source Suberic (C) -0.6 +0.1 +0.2 N.D. +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 -1.2 +0.3 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.2 +0.3 N.D. +0.7
motility outer cut, LB soft agar motility assay -0.4 +0.4 -0.1 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 -0.4 +0.3 N.D. +0.3
carbon source Protocatechuic Acid (C) +0.0 +0.2 +0.2 N.D. +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +0.4 -0.2 N.D. +0.6
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