Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33430	BPHYT_RS33435	BPHYT_RS33440	BPHYT_RS33445	BPHYT_RS33450
nitrogen source	L-Lysine (N)	-0.5	-0.7	-1.8	+0.4	-0.2
carbon source	Protocatechuic Acid (C)	-0.3	-0.3	+0.3	+0.2	-2.3
phage	24hr PHYTO2 MOI 1	-0.3	+0.3	-0.4	-0.2	-1.0
phage	P. phyto PHYTO2 MOI 1	+0.3	-0.6	-0.6	-0.3	-0.4
phage	24hr PHYTO3 MOI 0.1	+0.2	+0.1	-0.1	-0.1	-1.6
motility	outer cut, LB soft agar motility assay	-0.2	+0.1	-0.1	-0.2	-1.1
phage	24hr PHYTO11 MOI 0.1	-0.2	+0.1	+0.1	-0.2	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.2	-0.4	-0.1	-0.9
phage	36hr PHYTO6 MOI 0.1	+0.0	+0.2	-0.2	-0.2	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.5	+0.2	+0.1	-1.0
phage	24hr PHYTO9 MOI 10	-0.2	+0.4	-0.3	-0.0	-0.8
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.4	+0.1	+0.2	+0.1	-1.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-0.8	+0.3	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.6	+0.2	+0.2	-0.6
carbon source	Protocatechuic Acid (C)	+0.1	+0.3	+0.5	-0.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.4	-0.4	+0.3	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.4	-0.4	+0.3	-0.6
supernatant control	Vogels_fungal_media 0.1X	+0.6	-0.3	+0.2	-0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.6	+0.1	+0.2	-0.6
carbon source	Azelaic (C)	-0.4	-0.2	+0.3	+0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	+0.6	-0.2	+0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.8	-0.1	+0.3	-0.5
carbon source	Tween 20 (C)	-0.3	+0.1	-0.1	+0.3	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	-0.3	+0.3	+0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.3	+0.0	+0.4	+0.8
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.3	+0.1	+0.5	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.0	+0.5	+0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.1	-0.0	+0.3	+1.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.2	-0.1	+0.2	+2.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.4	+0.5	+5.8