Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33405	BPHYT_RS33410	BPHYT_RS33415	BPHYT_RS33420	BPHYT_RS33425
phage	P. phyto PHYTO2 MOI 1	+0.1	-0.6	-0.2	+0.1	-1.2
phage	36hr PHYTO11 MOI 0.1	-0.2	+0.2	-0.6	+0.3	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.4	-0.5	-0.3	-0.5
phage	24hr PHYTO7 MOI 1	-0.4	+0.3	-0.5	+0.2	-0.7
phage	36hr PHYTO2 MOI 1	-0.7	+0.2	-0.3	+0.2	-0.5
carbon source	D-Xylose (C)	-0.3	+0.5	-0.1	-0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.4	-0.4	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.0	+0.2	+0.3	-0.7
carbon source	D-Glucose (C)	+0.2	+0.1	-0.2	+0.3	-0.9
phage	36hr PHYTO1 MOI 1	-0.6	+0.4	-0.2	+0.3	-0.4
vitamin	With vitamins t2	+0.1	+0.2	-0.9	+0.3	-0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.0	+0.2	+0.4	-0.1	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.0	-0.2	+0.8	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	+0.4	+0.3	-0.9
carbon source	Tween 20 (C)	+0.2	+0.3	+0.2	+0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.3	+0.3	+0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.1	+0.6	-0.1	-0.7
carbon source	Protocatechuic Acid (C)	-0.4	+0.4	-0.5	+0.2	+0.6
phage	36hr PHYTO10 MOI 10	-0.2	+0.0	+0.7	+0.4	-0.5
phage	36hr PHYTO8 MOI 0.1	-0.1	+0.4	+0.5	+0.2	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+0.2	+0.2	+0.1	-0.5
carbon source	Phenylacetic 5 mM (C)	-0.5	+0.3	+0.6	-0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.1	+0.3	+0.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	+0.3	+0.8	-0.2	+0.1
carbon source	Malonic (C)	+0.4	+0.4	+0.6	-0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.4	+0.8	+0.3	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.3	+0.1	+0.4	+0.3	+1.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.6	+0.6	+0.3	+0.0
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.9	+1.0	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.0	+0.3	+0.2	+1.3