Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS33295 and BPHYT_RS33300 overlap by 14 nucleotidesBPHYT_RS33300 and BPHYT_RS33305 are separated by 360 nucleotidesBPHYT_RS33305 and BPHYT_RS33310 are separated by 81 nucleotidesBPHYT_RS33310 and BPHYT_RS33315 are separated by 112 nucleotides BPHYT_RS33295: BPHYT_RS33295 - ABC transporter ATP-binding protein, at 3,051,152 to 3,052,240 _RS33295 BPHYT_RS33300: BPHYT_RS33300 - ABC transporter, at 3,052,227 to 3,053,333 _RS33300 BPHYT_RS33305: BPHYT_RS33305 - peptidase, at 3,053,694 to 3,055,592 _RS33305 BPHYT_RS33310: BPHYT_RS33310 - epoxide hydrolase, at 3,055,674 to 3,056,645 _RS33310 BPHYT_RS33315: BPHYT_RS33315 - hypothetical protein, at 3,056,758 to 3,057,468 _RS33315
Group Condition BPHYT_RS33295 BPHYT_RS33300 BPHYT_RS33305 BPHYT_RS33310 BPHYT_RS33315
phage 36hr PHYTO6 MOI 1 N.D. +0.1 -1.0 -0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.8 -0.7 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.9 -0.0 -0.5 +0.2
phage 24hr PHYTO3 MOI 0.1 N.D. -0.4 -1.0 +0.3 -0.1
phage 36hr PHYTO2 MOI 1 N.D. -0.3 -1.1 +0.3 +0.0
phage 36hr PHYTO9 MOI 1 N.D. +0.2 -0.7 +0.2 -0.7
phage 36hr PHYTO1 MOI 1 N.D. -0.0 -0.6 +0.3 -0.4
carbon source adipate (C) N.D. +0.2 +0.3 -0.5 -0.6
phage 24hr PHYTO2 MOI 0.1 N.D. -0.4 -0.2 +0.5 -0.3
phage 36hr PHYTO10 MOI 10 N.D. +0.0 -0.7 -0.2 +0.5
phage P. phyto PHYTO2 MOI 1 N.D. +0.7 -0.7 -0.0 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 -0.3 -0.5 +0.1
phage 24hr PHYTO1 MOI 1 N.D. -0.2 -0.6 +0.5 +0.2
carbon source Tween 20 (C) N.D. +0.5 -0.5 +0.3 -0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.0 +0.3 -0.7 +0.6
phage 36hr PHYTO1 MOI 10 N.D. +0.7 -0.5 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 -0.2 -0.5 +0.9
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 +0.4 -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. +0.5 +0.5 +0.1 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.3 +0.1 +0.7 +0.3
phage 36hr PHYTO10 MOI 10 N.D. +0.6 -0.3 +0.5 +0.3
nitrogen source L-Proline (N) N.D. +0.4 -0.2 +0.4 +0.4
temperature LB 37C N.D. +0.1 -0.2 +1.1 +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +1.0 +0.0 -0.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.5 +0.7 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.6 -0.1 +0.5 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.2 +0.6 +0.5 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 +0.2 +0.3 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 -0.2 +1.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.5 +0.4 +0.5 +0.4
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BPHYT_RS33295
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BPHYT_RS33300
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BPHYT_RS33310
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BPHYT_RS33315
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