Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS33130 and BPHYT_RS33135 are separated by 130 nucleotidesBPHYT_RS33135 and BPHYT_RS33140 are separated by 110 nucleotidesBPHYT_RS33140 and BPHYT_RS33150 are separated by 778 nucleotidesBPHYT_RS33150 and BPHYT_RS33155 are separated by 467 nucleotides BPHYT_RS33130: BPHYT_RS33130 - transcriptional regulator, at 3,010,016 to 3,011,428 _RS33130 BPHYT_RS33135: BPHYT_RS33135 - LysR family transcriptional regulator, at 3,011,559 to 3,012,446 _RS33135 BPHYT_RS33140: BPHYT_RS33140 - short-chain dehydrogenase, at 3,012,557 to 3,013,306 _RS33140 BPHYT_RS33150: BPHYT_RS33150 - beta-lactamase, at 3,014,085 to 3,015,017 _RS33150 BPHYT_RS33155: BPHYT_RS33155 - hypothetical protein, at 3,015,485 to 3,015,670 _RS33155
Group Condition BPHYT_RS33130 BPHYT_RS33135 BPHYT_RS33140 BPHYT_RS33150 BPHYT_RS33155
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.5 N.D. -4.1 -0.3
phage 24hr PHYTO7 MOI 10 +0.1 +0.8 N.D. -4.1 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.2 N.D. -3.3 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.0 N.D. -2.5 -1.5
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.5 -0.1 N.D. -2.3 -1.4
phage 36hr PHYTO1 MOI 10 -0.5 -3.2 N.D. +0.6 -0.9
phage 24hr PHYTO3 MOI 10 -3.0 -0.7 N.D. -1.1 +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.0 +0.6 N.D. -4.7 +0.2
phage 36hr PHYTO8 MOI 10 -0.9 -2.5 N.D. +0.7 -0.8
phage 24hr PHYTO2 MOI 0.1 +0.3 -0.7 N.D. +1.1 -4.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -1.6 N.D. +0.2 -2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.9 +0.8 N.D. -4.8 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 -1.3 N.D. +1.8 -2.7
nitrogen source L-Glutamic (N) +0.0 +1.0 N.D. -2.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.7 N.D. -2.8 +0.6
phage 36hr PHYTO4 MOI 1 -1.0 -0.4 N.D. +1.8 -1.2
phage P. phyto corn MOI 1 +0.3 +1.4 N.D. -0.5 -1.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 -2.4 N.D. +1.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.8 N.D. -1.8 +1.0
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 +1.3 N.D. +0.9 -0.8
carbon source D-Glucose (C) -0.1 -1.3 N.D. +2.2 -0.5
carbon source Suberic (C) +1.0 +0.2 N.D. +2.5 -2.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.5 -0.8 N.D. +1.4 +1.3
phage 24hr PHYTO4 MOI 10 +0.9 +1.1 N.D. -1.2 +1.4
carbon source Azelaic (C) +0.8 +0.5 N.D. +2.3 -0.6
carbon source Dodecandioic (C) +0.6 +1.3 N.D. +2.5 -0.8
carbon source Protocatechuic Acid (C) +0.6 +0.8 N.D. +2.9 -0.7
carbon source Disodium Glutarate (C) +0.3 +0.3 N.D. +3.3 -0.1
carbon source Sebacic (C) +0.8 +0.5 N.D. +2.4 +0.3
carbon source Malonic (C) +0.6 +0.4 N.D. +3.2 +1.5
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