Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33095	BPHYT_RS33110	BPHYT_RS33115	BPHYT_RS33120	BPHYT_RS33125
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	-0.8	-1.2	-1.7
carbon source	Phenylacetic 5 mM (C)	N.D.	-1.1	+0.5	-1.2	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	-0.4	-1.5	-1.8
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	+0.3	+0.3	+0.1	-3.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.8	-0.8	-1.3	+0.4
carbon source	Tween 20 (C)	N.D.	+0.5	-0.4	-0.8	-1.7
phage	36hr PHYTO6 MOI 0.1	N.D.	-0.6	+0.3	-1.1	-0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	+0.7	-0.8	-0.8	-0.6
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	+0.5	-0.4	-0.5	-1.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-0.6	+0.4	+0.4	-1.3
phage	24hr PHYTO3 MOI 0.1	N.D.	+0.3	+0.4	-0.2	-1.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-0.4	-0.5	-1.2	+1.1
phage	24hr PHYTO11 MOI 0.1	N.D.	+0.7	-0.1	-2.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.8	-0.6	-0.3	+1.0
phage	36hr PHYTO10 MOI 10	N.D.	+0.1	+0.3	-1.7	+0.6
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	+0.9	-0.3	+0.0	-1.3
phage	36hr PHYTO1 MOI 1	N.D.	+0.8	-0.1	+0.2	-1.3
carbon source	Malonic (C)	N.D.	-0.7	-0.2	-0.6	+1.5
phage	36hr PHYTO8 MOI 10	N.D.	+0.9	+0.4	-0.9	+0.3
supernatant control	Vogels_fungal_media 0.1X	N.D.	-0.8	-0.1	+0.8	+1.1
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.9	+0.1	-0.9	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+1.3	-0.6	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.6	+0.8	+1.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.4	+0.3	-1.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.8	+0.0	-0.5	+1.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.5	+0.3	+2.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	+1.1	+0.0	+1.2
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	+1.1	-0.4	+2.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.6	+0.3	+2.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+3.9	-0.9	-0.5	+0.6