Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS33040	BPHYT_RS33045	BPHYT_RS33050	BPHYT_RS33055	BPHYT_RS33060
phage	36hr PHYTO8 MOI 10	+0.2	-1.6	-1.9	-0.2	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-0.6	-0.9	+0.2	-3.6
phage	24hr PHYTO11 MOI 1	+0.1	-1.7	-0.5	-0.8	-1.0
phage	24hr PHYTO2 MOI 0.1	+0.7	-0.9	-1.2	+0.3	-2.2
carbon source	Phenylacetic 5 mM (C)	-0.2	-1.1	-0.8	+0.3	-1.3
phage	P. phyto corn MOI 0.1	+0.8	-0.7	-0.3	-0.3	-2.7
phage	24hr PHYTO10 MOI 1	+0.3	-2.6	+0.0	+0.1	-0.8
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.1	-0.6	+0.5	-0.2	-2.7
phage	24hr PHYTO4 MOI 0.1	+0.3	-1.2	-0.6	-0.1	-1.2
phage	24hr PHYTO9 MOI 10	-0.0	-0.7	+0.3	-0.0	-2.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-1.3	+0.6	-0.4	-1.1
phage	24hr PHYTO2 MOI 0.1	+0.2	-2.6	-0.4	+0.2	+0.3
phage	PHYTO3 MOI 0.1	+0.4	-2.4	+0.6	+0.3	-1.0
nophagecontrol	24hr Phyto Lib Only	+0.3	-2.7	+0.1	+0.1	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.4	-0.8	+0.7	-0.4	-1.8
phage	24hr PHYTO6 MOI 0.1	+0.4	-2.6	-0.3	+0.2	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-1.6	+0.1	+0.4	-0.8
nitrogen source	L-Isoleucine (N)	+0.7	-1.2	-0.8	+0.1	-0.3
phage	36hr PHYTO6 MOI 10	+0.0	-2.4	+0.4	+0.0	+0.5
phage	24hr PHYTO6 MOI 0.1	+0.2	-1.9	-0.2	-0.1	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-1.5	+1.3	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-1.2	-0.5	+0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.4	+0.4	-0.6	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.4	+0.6	+0.6	-1.4
nitrogen source	L-Lysine (N)	-0.3	+1.0	-0.4	+0.8	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-1.2	+0.7	+0.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-1.4	+0.7	-0.1	+0.7
nitrogen source	L-Glutamic (N)	+0.2	+1.4	+0.4	+0.4	-1.2
vitamin	No vitamins t1	+0.2	-0.8	+0.2	-0.5	+2.1
phage	36hr PHYTO1 MOI 10	+0.4	+1.0	+0.6	-0.3	+1.0